JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLHL35_chr11_75417394_75438203	0/0	t0006	348	1	0	0	0	0	1	copy fasta	KLHL35	chr11	75417394	75438203
KLHL35_chr11_75417394_75438203	0/0	t0007	348	1	1	0	0	0	0	copy fasta	KLHL35	chr11	75417394	75438203
KLHL35_chr11_75417394_75438203	0/0	t0008	348	1	1	0	0	0	0	copy fasta	KLHL35	chr11	75417394	75438203
KLHL35_chr11_75417394_75438203	0/0	t0009	348	1	0	1	0	0	0	copy fasta	KLHL35	chr11	75417394	75438203
KLHL36_chr16_84643511_84672686	0/0	t0001	5706	63	1	23	32	2	5	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	1/0	t0002	5709	60	13	11	28	0	7	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/1	t0003	5720	59	1	8	37	7	5	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0004	5718	57	1	5	39	3	9	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0005	5718	10	0	2	7	0	1	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0006	5717	6	6	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0007	5707	6	0	3	0	2	1	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0008	5707	5	0	4	0	0	1	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0009	5720	5	5	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0010	5717	5	1	0	4	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0011	5718	4	0	0	0	0	4	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0012	5710	4	4	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0013	5718	4	4	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0014	5718	4	0	0	4	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0015	5716	3	0	0	3	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0016	5706	3	0	0	3	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0017	5718	3	3	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0018	5720	3	3	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0019	5717	3	3	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0020	5717	3	3	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0021	5717	3	3	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0022	5720	3	0	1	0	2	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0023	5720	3	0	0	3	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0024	5709	2	0	0	2	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0025	5709	2	2	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0026	5706	2	0	0	2	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0027	5716	2	0	0	1	0	1	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0028	5706	2	0	0	2	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0029	5718	2	0	0	0	0	2	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0030	5718	2	2	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0031	5718	2	2	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0032	5710	2	2	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0033	5709	2	0	0	1	0	1	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0034	5718	2	0	0	2	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0035	5707	2	0	0	2	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0036	5707	2	0	0	0	0	2	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0037	5717	2	2	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0038	5707	2	2	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0039	5719	2	2	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0040	5720	2	0	0	2	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0041	5710	2	0	1	0	1	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0042	5709	2	1	1	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0043	5719	1	0	0	0	0	1	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0044	5718	1	0	0	0	0	1	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0045	5709	1	1	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0046	5709	1	0	0	1	0	0	copy fasta	KLHL36	chr16	84643511	84672686