JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLHL36_chr16_84643511_84672686	0/0	t0097	5706	1	0	0	1	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0098	5717	1	1	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0099	5717	1	1	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0100	5707	1	0	0	1	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0101	5717	1	0	1	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0102	5717	1	0	0	1	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0103	5717	1	1	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0104	5717	1	1	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0105	5717	1	1	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0106	5717	1	1	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0107	5717	1	1	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0108	5717	1	1	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0109	5717	1	0	1	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0110	5707	1	0	1	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0111	5707	1	1	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0112	5717	1	1	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0113	5707	1	0	0	0	1	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0114	5717	1	1	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0115	5717	1	1	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0116	5717	1	1	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0117	5720	1	0	0	1	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0118	5719	1	1	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0119	5719	1	0	0	0	0	1	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0120	5720	1	0	0	1	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0121	5720	1	0	0	1	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0122	5721	1	0	0	1	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0123	5720	1	0	1	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0124	5720	1	0	0	1	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0125	5710	1	0	0	0	0	1	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0126	5721	1	0	0	1	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0127	5720	1	0	0	1	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0128	5710	1	0	0	1	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0129	5710	1	0	0	1	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0130	5720	1	0	0	0	0	1	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0131	5721	1	0	0	1	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0132	5721	1	0	0	1	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	t0133	5709	1	0	1	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL38_chr8_123639442_123658801	0/1	t0001	1522	125	4	27	71	9	13	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0002	1526	53	12	7	26	2	6	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0003	1520	35	13	11	8	1	2	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0004	1532	32	0	4	23	0	5	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	1/0	t0005	1514	29	2	12	9	1	4	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0006	1518	16	0	3	12	0	1	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0007	1530	12	1	0	11	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0008	1520	11	0	0	11	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0009	1522	9	8	1	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0010	1528	9	0	0	9	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0011	1534	7	1	0	5	0	1	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0012	1518	6	6	0	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0013	1528	6	1	0	5	0	0	copy fasta	KLHL38	chr8	123639442	123658801