JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLHL38_chr8_123639442_123658801	0/0	t0014	1514	6	0	0	6	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0015	1524	5	0	2	0	0	3	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0016	1526	5	4	0	1	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0017	1522	5	1	1	0	3	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0018	1524	5	3	0	0	0	2	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0019	1524	5	0	0	2	0	3	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0020	1522	5	0	0	5	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0021	1520	5	5	0	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0022	1514	4	4	0	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0023	1516	4	4	0	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0024	1516	3	3	0	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0025	1532	3	2	1	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0026	1538	3	2	1	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0027	1522	2	1	1	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0028	1510	2	2	0	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0029	1538	2	0	0	0	0	2	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0030	1536	2	1	0	0	0	1	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0031	1522	2	2	0	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0032	1518	2	2	0	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0033	1510	2	0	1	0	0	1	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0034	1522	2	0	0	2	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0035	1514	1	0	1	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0036	1542	1	0	0	0	0	1	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0037	1528	1	1	0	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0038	1532	1	0	0	1	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0039	1532	1	0	0	1	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0040	1532	1	1	0	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0041	1524	1	0	0	1	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0042	1522	1	0	0	1	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0043	1520	1	0	0	0	0	1	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0044	1520	1	0	1	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0045	1522	1	0	0	1	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0046	1522	1	0	0	1	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0047	1528	1	0	1	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0048	1520	1	1	0	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0049	1524	1	1	0	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0050	1510	1	0	0	1	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0051	1514	1	0	1	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0052	1532	1	1	0	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0053	1520	1	1	0	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0054	1518	1	0	0	1	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0055	1516	1	1	0	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	t0056	1520	1	1	0	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL3_chr5_137612500_137741089	0/1	t0001	5040	59	20	13	16	4	5	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	t0002	5041	42	8	19	0	5	10	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	t0003	5041	28	1	14	5	1	7	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	t0004	5040	27	21	1	3	1	1	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	t0005	5042	23	0	3	14	0	6	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	t0006	5042	12	5	2	4	0	1	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	t0007	5042	10	9	1	0	0	0	copy fasta	KLHL3	chr5	137612500	137741089