JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLHL3_chr5_137612500_137741089	0/0	t0008	5041	4	2	1	0	1	0	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	t0009	5041	3	0	1	0	0	2	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	t0010	5039	3	0	0	2	0	1	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	t0011	5040	3	0	3	0	0	0	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	t0012	5040	3	1	0	0	2	0	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	t0013	5043	3	0	0	3	0	0	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	1/0	t0014	5042	3	2	0	0	0	0	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	t0015	5043	3	0	1	0	0	2	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	t0016	5040	2	2	0	0	0	0	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	t0017	5041	2	1	1	0	0	0	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	t0018	5041	2	2	0	0	0	0	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	t0019	5041	2	0	0	2	0	0	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	t0020	5040	1	1	0	0	0	0	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	t0021	5040	1	1	0	0	0	0	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	t0022	5040	1	1	0	0	0	0	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	t0023	5039	1	1	0	0	0	0	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	t0024	5040	1	0	0	1	0	0	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	t0025	5040	1	0	1	0	0	0	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	t0026	5040	1	1	0	0	0	0	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	t0027	5040	1	1	0	0	0	0	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	t0028	5040	1	1	0	0	0	0	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	t0029	5039	1	0	0	0	0	1	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	t0030	5039	1	1	0	0	0	0	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	t0031	5040	1	1	0	0	0	0	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	t0032	5041	1	0	0	1	0	0	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	t0033	5040	1	0	1	0	0	0	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	t0034	5040	1	0	0	1	0	0	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	t0035	5043	1	0	0	0	0	1	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	t0036	5042	1	1	0	0	0	0	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	t0037	5042	1	0	0	0	0	1	copy fasta	KLHL3	chr5	137612500	137741089
KLHL40_chr3_42680537_42697544	0/1	t0001	634	267	41	60	116	13	36	copy fasta	KLHL40	chr3	42680537	42697544
KLHL40_chr3_42680537_42697544	1/0	t0002	634	157	47	27	65	3	14	copy fasta	KLHL40	chr3	42680537	42697544
KLHL40_chr3_42680537_42697544	0/0	t0003	634	7	6	1	0	0	0	copy fasta	KLHL40	chr3	42680537	42697544
KLHL40_chr3_42680537_42697544	0/0	t0004	634	5	0	0	5	0	0	copy fasta	KLHL40	chr3	42680537	42697544
KLHL40_chr3_42680537_42697544	0/0	t0005	634	1	1	0	0	0	0	copy fasta	KLHL40	chr3	42680537	42697544
KLHL40_chr3_42680537_42697544	0/0	t0006	634	1	1	0	0	0	0	copy fasta	KLHL40	chr3	42680537	42697544
KLHL41_chr2_169504702_169531258	1/1	t0001	640	397	79	54	204	14	44	copy fasta	KLHL41	chr2	169504702	169531258
KLHL41_chr2_169504702_169531258	0/0	t0002	644	11	11	0	0	0	0	copy fasta	KLHL41	chr2	169504702	169531258
KLHL41_chr2_169504702_169531258	0/0	t0003	640	5	0	3	0	0	2	copy fasta	KLHL41	chr2	169504702	169531258
KLHL41_chr2_169504702_169531258	0/0	t0004	642	4	4	0	0	0	0	copy fasta	KLHL41	chr2	169504702	169531258
KLHL41_chr2_169504702_169531258	0/0	t0005	640	3	2	1	0	0	0	copy fasta	KLHL41	chr2	169504702	169531258
KLHL41_chr2_169504702_169531258	0/0	t0006	640	2	0	2	0	0	0	copy fasta	KLHL41	chr2	169504702	169531258
KLHL42_chr12_27775233_27808040	0/0	t0001	4981	71	2	15	34	5	15	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0002	4973	56	3	13	29	0	11	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0003	4981	35	4	4	24	1	2	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0004	4981	35	0	5	20	5	5	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0005	4970	22	0	0	22	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0006	4974	16	16	0	0	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0007	4982	11	4	5	0	0	2	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0008	4972	9	9	0	0	0	0	copy fasta	KLHL42	chr12	27775233	27808040