Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AP3M1_chr10_74115255_74155828	0/1	t0002	3635	90	12	13	47	6	11	copy fasta	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	t0003	3635	56	19	11	23	1	2	copy fasta	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	t0004	3635	14	11	3	0	0	0	copy fasta	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	t0005	3635	11	0	3	8	0	0	copy fasta	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	t0006	3635	10	10	0	0	0	0	copy fasta	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	t0007	3635	8	1	1	5	0	1	copy fasta	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	t0008	3635	7	6	1	0	0	0	copy fasta	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	t0009	3633	4	0	0	4	0	0	copy fasta	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	t0010	3633	3	0	0	3	0	0	copy fasta	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	t0011	3635	2	1	1	0	0	0	copy fasta	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	t0012	3635	2	1	0	0	0	1	copy fasta	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	t0013	3635	2	2	0	0	0	0	copy fasta	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	t0014	3635	2	0	0	0	2	0	copy fasta	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	t0015	3633	2	2	0	0	0	0	copy fasta	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	t0016	3633	1	1	0	0	0	0	copy fasta	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	t0017	3633	1	0	0	1	0	0	copy fasta	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	t0018	3635	1	1	0	0	0	0	copy fasta	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	t0019	3635	1	1	0	0	0	0	copy fasta	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	t0020	3635	1	0	1	0	0	0	copy fasta	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	t0021	3635	1	0	0	1	0	0	copy fasta	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	t0022	3635	1	1	0	0	0	0	copy fasta	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	t0023	3635	1	0	0	1	0	0	copy fasta	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	t0024	3635	1	1	0	0	0	0	copy fasta	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	t0025	3635	1	0	1	0	0	0	copy fasta	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	t0026	3633	1	0	0	0	0	1	copy fasta	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	t0027	3633	1	0	0	1	0	0	copy fasta	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	t0028	3633	1	0	0	1	0	0	copy fasta	AP3M1	chr10	74115255	74155828
AP3M2_chr8_42148063_42176183	1/0	t0001	2238	155	24	30	82	6	12	copy fasta	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/1	t0002	2238	76	0	18	46	3	8	copy fasta	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	t0003	2238	53	2	10	35	2	4	copy fasta	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	t0004	2238	29	28	1	0	0	0	copy fasta	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	t0005	2238	18	6	0	8	0	4	copy fasta	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	t0006	2237	9	1	4	0	3	1	copy fasta	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	t0007	2238	6	6	0	0	0	0	copy fasta	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	t0008	2238	6	6	0	0	0	0	copy fasta	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	t0009	2238	6	6	0	0	0	0	copy fasta	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	t0010	2238	4	0	4	0	0	0	copy fasta	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	t0011	2237	4	2	2	0	0	0	copy fasta	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	t0012	2238	4	0	0	4	0	0	copy fasta	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	t0013	2238	3	0	2	0	0	1	copy fasta	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	t0014	2238	3	0	0	3	0	0	copy fasta	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	t0015	2237	3	0	0	0	0	3	copy fasta	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	t0016	2238	2	0	0	2	0	0	copy fasta	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	t0017	2238	2	2	0	0	0	0	copy fasta	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	t0018	2238	1	0	0	1	0	0	copy fasta	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	t0019	2238	1	1	0	0	0	0	copy fasta	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	t0020	2238	1	0	0	1	0	0	copy fasta	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	t0021	2238	1	0	0	1	0	0	copy fasta	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	t0022	2238	1	1	0	0	0	0	copy fasta	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	t0023	2238	1	0	0	1	0	0	copy fasta	AP3M2	chr8	42148063	42176183