JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLHL42_chr12_27775233_27808040	0/0	t0059	4976	1	1	0	0	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0060	4982	1	0	0	1	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0061	4983	1	0	0	1	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0062	4987	1	1	0	0	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0063	4973	1	0	0	1	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0064	4985	1	1	0	0	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0065	4947	1	0	0	1	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0066	4976	1	0	1	0	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0067	4972	1	1	0	0	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0068	4974	1	0	0	0	0	1	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0069	4975	1	0	0	0	0	1	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0070	4975	1	1	0	0	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0071	4982	1	1	0	0	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0072	4979	1	1	0	0	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0073	4981	1	0	1	0	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0074	4981	1	0	1	0	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0075	4983	1	0	0	1	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0076	4984	1	0	1	0	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0077	4980	1	1	0	0	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0078	4983	1	0	0	1	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0079	4973	1	0	0	1	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0080	4979	1	0	0	1	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0081	4983	1	1	0	0	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0082	4973	1	0	0	1	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0083	4981	1	1	0	0	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0084	4973	1	1	0	0	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0085	4979	1	0	0	1	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0086	4979	1	0	0	0	1	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0087	4979	1	0	1	0	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0088	4981	1	0	1	0	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0089	4978	1	1	0	0	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0090	4970	1	0	1	0	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	t0091	4981	1	0	1	0	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL4_chrX_87512802_87675050	0/1	t0001	3610	95	18	14	42	4	16	copy fasta	KLHL4	chrX	87512802	87675050
KLHL4_chrX_87512802_87675050	0/0	t0002	3609	93	9	27	46	2	9	copy fasta	KLHL4	chrX	87512802	87675050
KLHL4_chrX_87512802_87675050	0/0	t0003	3610	14	3	0	6	0	5	copy fasta	KLHL4	chrX	87512802	87675050
KLHL4_chrX_87512802_87675050	0/0	t0004	3610	14	12	1	0	1	0	copy fasta	KLHL4	chrX	87512802	87675050
KLHL4_chrX_87512802_87675050	0/0	t0005	3609	8	8	0	0	0	0	copy fasta	KLHL4	chrX	87512802	87675050
KLHL4_chrX_87512802_87675050	0/0	t0006	3610	7	0	0	7	0	0	copy fasta	KLHL4	chrX	87512802	87675050
KLHL4_chrX_87512802_87675050	0/0	t0007	3608	6	4	0	0	0	2	copy fasta	KLHL4	chrX	87512802	87675050
KLHL4_chrX_87512802_87675050	0/0	t0008	3610	3	0	0	3	0	0	copy fasta	KLHL4	chrX	87512802	87675050
KLHL4_chrX_87512802_87675050	0/0	t0009	3610	2	2	0	0	0	0	copy fasta	KLHL4	chrX	87512802	87675050
KLHL4_chrX_87512802_87675050	0/0	t0010	3609	2	1	0	1	0	0	copy fasta	KLHL4	chrX	87512802	87675050
KLHL4_chrX_87512802_87675050	0/0	t0011	3610	1	0	0	1	0	0	copy fasta	KLHL4	chrX	87512802	87675050
KLHL4_chrX_87512802_87675050	0/0	t0012	3607	1	1	0	0	0	0	copy fasta	KLHL4	chrX	87512802	87675050
KLHL4_chrX_87512802_87675050	0/0	t0013	3608	1	0	1	0	0	0	copy fasta	KLHL4	chrX	87512802	87675050
KLHL4_chrX_87512802_87675050	0/0	t0014	3608	1	0	0	1	0	0	copy fasta	KLHL4	chrX	87512802	87675050
KLHL4_chrX_87512802_87675050	0/0	t0015	3606	1	0	0	1	0	0	copy fasta	KLHL4	chrX	87512802	87675050
KLHL4_chrX_87512802_87675050	0/0	t0016	3610	1	0	0	1	0	0	copy fasta	KLHL4	chrX	87512802	87675050
KLHL4_chrX_87512802_87675050	0/0	t0017	3610	1	0	0	0	0	1	copy fasta	KLHL4	chrX	87512802	87675050