JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLHL4_chrX_87512802_87675050	0/0	t0018	3610	1	0	0	1	0	0	copy fasta	KLHL4	chrX	87512802	87675050
KLHL4_chrX_87512802_87675050	1/0	t0019	3609	1	0	0	0	0	0	copy fasta	KLHL4	chrX	87512802	87675050
KLHL4_chrX_87512802_87675050	0/0	t0020	3608	1	0	0	1	0	0	copy fasta	KLHL4	chrX	87512802	87675050
KLHL4_chrX_87512802_87675050	0/0	t0021	3609	1	0	0	0	0	1	copy fasta	KLHL4	chrX	87512802	87675050
KLHL4_chrX_87512802_87675050	0/0	t0022	3608	1	1	0	0	0	0	copy fasta	KLHL4	chrX	87512802	87675050
KLHL4_chrX_87512802_87675050	0/0	t0023	3608	1	1	0	0	0	0	copy fasta	KLHL4	chrX	87512802	87675050
KLHL4_chrX_87512802_87675050	0/0	t0024	3609	1	0	0	1	0	0	copy fasta	KLHL4	chrX	87512802	87675050
KLHL4_chrX_87512802_87675050	0/0	t0025	3609	1	0	0	1	0	0	copy fasta	KLHL4	chrX	87512802	87675050
KLHL5_chr4_39057232_39131233	1/0	t0001	5589	58	7	10	34	0	6	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/1	t0002	5591	56	4	11	35	2	3	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0003	5589	30	18	1	11	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0004	5589	27	0	10	13	1	3	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0005	5592	22	3	7	8	0	4	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0006	5590	16	1	2	11	0	2	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0007	5590	14	9	2	3	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0008	5590	10	3	3	1	2	1	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0009	5587	8	0	0	6	0	2	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0010	5591	8	0	0	8	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0011	5591	5	0	3	1	1	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0012	5577	5	5	0	0	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0013	5589	4	2	0	0	0	2	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0014	5591	3	0	0	2	0	1	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0015	5589	3	3	0	0	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0016	5600	2	2	0	0	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0017	5590	2	2	0	0	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0018	5592	2	0	0	2	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0019	5590	2	2	0	0	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0020	5590	2	1	0	1	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0021	5604	2	2	0	0	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0022	5590	2	2	0	0	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0023	5589	1	0	0	1	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0024	5577	1	1	0	0	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0025	5589	1	1	0	0	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0026	5605	1	1	0	0	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0027	5601	1	1	0	0	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0028	5587	1	1	0	0	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0029	5591	1	0	0	0	0	1	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0030	5592	1	0	0	0	0	1	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0031	5592	1	1	0	0	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0032	5578	1	1	0	0	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0033	5590	1	0	0	1	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0034	5589	1	1	0	0	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0035	5590	1	1	0	0	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0036	5589	1	0	1	0	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0037	5589	1	0	1	0	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0038	5589	1	1	0	0	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0039	5589	1	1	0	0	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0040	5590	1	0	1	0	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0041	5603	1	1	0	0	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL5_chr4_39057232_39131233	0/0	t0042	5600	1	1	0	0	0	0	copy fasta	KLHL5	chr4	39057232	39131233