JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLHL5_chr4_39057232_39131233	0/0	t0043	5590	1	1	0	0	0	0	copy fasta	KLHL5	chr4	39057232	39131233
KLHL6_chr3_183482551_183560706	0/0	t0001	4417	41	4	7	29	0	1	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0002	4430	28	2	12	11	2	1	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/1	t0003	4430	13	0	8	1	1	2	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0004	4418	12	1	0	7	0	4	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0005	4417	9	0	1	8	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0006	4417	7	2	2	2	0	1	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0007	4416	7	0	0	7	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0008	4417	6	0	1	1	1	3	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0009	4419	5	0	3	0	2	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0010	4430	5	0	0	3	0	2	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0011	4417	5	4	1	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0012	4417	5	0	0	4	0	1	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0013	4431	4	4	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0014	4418	4	0	4	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0015	4417	4	3	0	0	0	1	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0016	4418	4	4	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0017	4419	3	2	1	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0018	4429	3	0	0	3	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0019	4430	3	0	0	3	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0020	4430	3	1	1	0	1	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0021	4431	3	0	3	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0022	4418	3	3	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0023	4441	2	2	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0024	4418	2	2	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0025	4419	2	2	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0026	4419	2	0	2	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0027	4419	2	2	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0028	4430	2	0	0	0	0	2	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0029	4429	2	0	0	2	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0030	4430	2	0	1	0	1	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0031	4430	2	0	0	2	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0032	4431	2	1	1	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0033	4430	2	0	1	0	0	1	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0034	4417	2	2	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0035	4417	2	2	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0036	4416	2	0	0	2	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0037	4417	2	2	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0038	4418	2	0	0	2	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0039	4417	2	0	0	2	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0040	4418	2	2	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0041	4430	2	2	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0042	4441	1	1	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0043	4441	1	1	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0044	4441	1	1	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0045	4441	1	0	1	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0046	4430	1	1	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0047	4418	1	1	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0048	4419	1	1	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706
KLHL6_chr3_183482551_183560706	0/0	t0049	4418	1	1	0	0	0	0	copy fasta	KLHL6	chr3	183482551	183560706