JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLHL8_chr4_87155103_87225618	0/0	t0017	3769	3	3	0	0	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0018	3773	3	3	0	0	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0019	3769	2	1	1	0	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0020	3769	2	0	0	2	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0021	3770	2	0	0	2	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0022	3773	2	2	0	0	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0023	3773	2	2	0	0	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0024	3769	1	1	0	0	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0025	3770	1	0	0	0	0	1	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0026	3770	1	0	0	1	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0027	3769	1	0	0	1	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0028	3770	1	0	0	1	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0029	3769	1	0	0	1	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0030	3770	1	1	0	0	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0031	3771	1	0	0	1	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0032	3769	1	0	0	0	0	1	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0033	3769	1	0	0	1	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0034	3770	1	0	0	1	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0035	3770	1	1	0	0	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0036	3770	1	0	1	0	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0037	3769	1	0	0	0	0	1	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0038	3769	1	1	0	0	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0039	3768	1	1	0	0	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0040	3771	1	0	0	0	0	1	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0041	3773	1	0	0	1	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL8_chr4_87155103_87225618	0/0	t0042	3772	1	0	1	0	0	0	copy fasta	KLHL8	chr4	87155103	87225618
KLHL9_chr9_21324665_21340404	0/1	t0001	3889	250	58	50	95	10	36	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	t0002	3889	88	7	15	59	5	2	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	t0003	3888	28	0	0	28	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	t0004	3885	11	6	4	0	1	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	t0005	3889	5	0	0	5	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	t0006	3877	4	0	3	0	1	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	t0007	3889	4	4	0	0	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	t0008	3889	3	3	0	0	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	t0009	3887	3	0	0	3	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	t0010	3897	3	2	1	0	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	t0011	3889	2	2	0	0	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	t0012	3889	2	2	0	0	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	t0013	3889	2	2	0	0	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	1/0	t0014	3887	2	0	0	1	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	t0015	3889	2	1	1	0	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	t0016	3888	2	0	0	2	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	t0017	3889	2	0	2	0	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	t0018	3887	2	2	0	0	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	t0019	3889	1	1	0	0	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	t0020	3890	1	1	0	0	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	t0021	3889	1	0	0	0	0	1	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	t0022	3889	1	0	0	1	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	t0023	3888	1	0	0	1	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	t0024	3887	1	0	0	0	0	1	copy fasta	KLHL9	chr9	21324665	21340404