JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLHL9_chr9_21324665_21340404	0/0	t0025	3890	1	1	0	0	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	t0026	3889	1	0	0	1	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	t0027	3889	1	0	0	0	1	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	t0028	3889	1	0	0	1	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	t0029	3889	1	0	0	1	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	t0030	3889	1	0	1	0	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	t0031	3889	1	0	1	0	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	t0032	3889	1	0	0	1	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	t0033	3888	1	0	0	1	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	t0034	3889	1	0	0	1	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	t0035	3889	1	0	0	1	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLK10_chr19_51007739_51024709	1/0	t0001	2154	136	2	25	77	6	25	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0002	2163	116	37	27	37	6	9	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0003	2164	43	12	9	18	0	4	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0004	2164	35	6	4	25	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0005	2154	32	1	1	28	0	2	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0006	2164	7	7	0	0	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0007	2154	7	0	4	3	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0008	2154	7	0	0	7	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0009	2164	5	0	1	0	1	3	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0010	2165	5	5	0	0	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0011	2164	5	3	2	0	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0012	2165	4	3	0	1	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0013	2163	4	3	1	0	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0014	2164	4	0	0	4	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0015	2164	3	3	0	0	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0016	2164	3	0	0	3	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0017	2165	3	3	0	0	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/1	t0018	2163	3	0	1	0	0	1	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0019	2163	3	3	0	0	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0020	2136	2	0	1	0	1	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0021	2164	2	0	1	0	0	1	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0022	2164	2	2	0	0	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0023	2163	2	2	0	0	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0024	2154	2	0	0	2	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0025	2165	1	0	0	1	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0026	2164	1	0	0	1	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0027	2165	1	0	1	0	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0028	2164	1	1	0	0	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0029	2163	1	1	0	0	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0030	2163	1	0	0	1	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0031	2163	1	0	0	1	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0032	2164	1	0	1	0	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0033	2164	1	1	0	0	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0034	2163	1	1	0	0	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0035	2163	1	0	1	0	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0036	2154	1	0	0	0	0	1	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0037	2154	1	0	0	1	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0038	2154	1	0	0	1	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	t0039	2154	1	0	0	1	0	0	copy fasta	KLK10	chr19	51007739	51024709