JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLK11_chr19_51017236_51031616	1/0	t0001	424	289	41	62	129	14	42	copy fasta	KLK11	chr19	51017236	51031616
KLK11_chr19_51017236_51031616	0/1	t0002	424	133	45	15	62	4	6	copy fasta	KLK11	chr19	51017236	51031616
KLK11_chr19_51017236_51031616	0/0	t0003	424	12	0	6	6	0	0	copy fasta	KLK11	chr19	51017236	51031616
KLK11_chr19_51017236_51031616	0/0	t0004	424	8	8	0	0	0	0	copy fasta	KLK11	chr19	51017236	51031616
KLK11_chr19_51017236_51031616	0/0	t0005	424	6	0	0	6	0	0	copy fasta	KLK11	chr19	51017236	51031616
KLK11_chr19_51017236_51031616	0/0	t0006	424	2	0	0	2	0	0	copy fasta	KLK11	chr19	51017236	51031616
KLK11_chr19_51017236_51031616	0/0	t0007	424	1	1	0	0	0	0	copy fasta	KLK11	chr19	51017236	51031616
KLK11_chr19_51017236_51031616	0/0	t0008	424	1	1	0	0	0	0	copy fasta	KLK11	chr19	51017236	51031616
KLK11_chr19_51017236_51031616	0/0	t0009	424	1	0	1	0	0	0	copy fasta	KLK11	chr19	51017236	51031616
KLK11_chr19_51017236_51031616	0/0	t0010	424	1	1	0	0	0	0	copy fasta	KLK11	chr19	51017236	51031616
KLK11_chr19_51017236_51031616	0/0	t0011	424	1	0	0	1	0	0	copy fasta	KLK11	chr19	51017236	51031616
KLK11_chr19_51017236_51031616	0/0	t0012	424	1	1	0	0	0	0	copy fasta	KLK11	chr19	51017236	51031616
KLK12_chr19_51024094_51040002	1/0	t0001	425	237	61	36	89	8	42	copy fasta	KLK12	chr19	51024094	51040002
KLK12_chr19_51024094_51040002	0/1	t0002	425	160	15	23	113	2	6	copy fasta	KLK12	chr19	51024094	51040002
KLK12_chr19_51024094_51040002	0/0	t0003	425	47	20	19	1	6	1	copy fasta	KLK12	chr19	51024094	51040002
KLK12_chr19_51024094_51040002	0/0	t0004	425	2	0	0	0	2	0	copy fasta	KLK12	chr19	51024094	51040002
KLK12_chr19_51024094_51040002	0/0	t0005	425	1	0	0	1	0	0	copy fasta	KLK12	chr19	51024094	51040002
KLK12_chr19_51024094_51040002	0/0	t0006	425	1	0	0	0	0	1	copy fasta	KLK12	chr19	51024094	51040002
KLK13_chr19_51050626_51070092	0/0	t0001	987	238	14	32	167	6	19	copy fasta	KLK13	chr19	51050626	51070092
KLK13_chr19_51050626_51070092	1/1	t0002	987	211	80	50	37	12	30	copy fasta	KLK13	chr19	51050626	51070092
KLK13_chr19_51050626_51070092	0/0	t0003	987	3	0	0	3	0	0	copy fasta	KLK13	chr19	51050626	51070092
KLK13_chr19_51050626_51070092	0/0	t0004	987	2	2	0	0	0	0	copy fasta	KLK13	chr19	51050626	51070092
KLK13_chr19_51050626_51070092	0/0	t0005	987	1	1	0	0	0	0	copy fasta	KLK13	chr19	51050626	51070092
KLK13_chr19_51050626_51070092	0/0	t0006	987	1	0	0	1	0	0	copy fasta	KLK13	chr19	51050626	51070092
KLK13_chr19_51050626_51070092	0/0	t0007	987	1	1	0	0	0	0	copy fasta	KLK13	chr19	51050626	51070092
KLK13_chr19_51050626_51070092	0/0	t0008	987	1	0	0	1	0	0	copy fasta	KLK13	chr19	51050626	51070092
KLK13_chr19_51050626_51070092	0/0	t0009	987	1	0	0	0	0	1	copy fasta	KLK13	chr19	51050626	51070092
KLK13_chr19_51050626_51070092	0/0	t0010	987	1	0	0	1	0	0	copy fasta	KLK13	chr19	51050626	51070092
KLK14_chr19_51072897_51087887	1/1	t0001	299	400	67	75	195	18	43	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	t0002	299	26	20	3	0	0	3	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	t0003	267	10	10	0	0	0	0	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	t0004	300	4	0	0	4	0	0	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	t0005	300	1	1	0	0	0	0	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	t0006	267	1	0	0	1	0	0	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	t0007	299	1	0	0	1	0	0	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	t0008	299	1	0	0	1	0	0	copy fasta	KLK14	chr19	51072897	51087887
KLK15_chr19_50820289_50838574	1/0	t0001	587	298	79	53	121	10	34	copy fasta	KLK15	chr19	50820289	50838574
KLK15_chr19_50820289_50838574	0/1	t0002	587	132	9	29	74	6	13	copy fasta	KLK15	chr19	50820289	50838574
KLK15_chr19_50820289_50838574	0/0	t0003	587	5	5	0	0	0	0	copy fasta	KLK15	chr19	50820289	50838574
KLK15_chr19_50820289_50838574	0/0	t0004	587	2	0	2	0	0	0	copy fasta	KLK15	chr19	50820289	50838574
KLK15_chr19_50820289_50838574	0/0	t0005	587	1	1	0	0	0	0	copy fasta	KLK15	chr19	50820289	50838574
KLK15_chr19_50820289_50838574	0/0	t0006	587	1	0	0	1	0	0	copy fasta	KLK15	chr19	50820289	50838574
KLK15_chr19_50820289_50838574	0/0	t0007	587	1	0	0	0	0	1	copy fasta	KLK15	chr19	50820289	50838574
KLK15_chr19_50820289_50838574	0/0	t0008	587	1	1	0	0	0	0	copy fasta	KLK15	chr19	50820289	50838574
KLK15_chr19_50820289_50838574	0/0	t0009	587	1	1	0	0	0	0	copy fasta	KLK15	chr19	50820289	50838574
KLK1_chr19_50814146_50828787	1/1	t0001	88	422	96	82	178	18	46	copy fasta	KLK1	chr19	50814146	50828787
KLK2_chr19_50868439_50885567	1/1	t0001	2044	255	8	45	156	11	33	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	t0002	2044	106	30	24	40	5	7	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	t0003	2044	22	21	1	0	0	0	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	t0004	2044	20	20	0	0	0	0	copy fasta	KLK2	chr19	50868439	50885567