JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLK2_chr19_50868439_50885567	0/0	t0005	2044	18	1	8	3	1	5	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	t0006	2044	6	5	1	0	0	0	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	t0007	2044	5	0	2	0	1	2	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	t0008	2044	4	0	0	4	0	0	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	t0009	2044	3	2	1	0	0	0	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	t0010	2044	2	2	0	0	0	0	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	t0011	2044	2	2	0	0	0	0	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	t0012	2044	1	0	0	0	0	1	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	t0013	2044	1	0	0	0	0	1	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	t0014	2044	1	0	0	1	0	0	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	t0015	2044	1	0	0	0	0	1	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	t0016	2044	1	0	0	1	0	0	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	t0017	2044	1	0	0	1	0	0	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	t0018	2044	1	0	1	0	0	0	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	t0019	2044	1	0	1	0	0	0	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	t0020	2044	1	1	0	0	0	0	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	t0021	2044	1	1	0	0	0	0	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	t0022	2044	1	1	0	0	0	0	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	t0023	2044	1	1	0	0	0	0	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	t0024	2044	1	1	0	0	0	0	copy fasta	KLK2	chr19	50868439	50885567
KLK3_chr19_50849915_50865764	1/1	t0001	679	192	40	35	87	4	24	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	t0002	679	132	5	25	82	6	14	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	t0003	679	71	26	14	16	7	8	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	t0004	679	57	21	9	22	1	4	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	t0005	679	3	3	0	0	0	0	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	t0006	679	2	2	0	0	0	0	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	t0007	679	2	2	0	0	0	0	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	t0008	679	1	0	1	0	0	0	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	t0009	679	1	1	0	0	0	0	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	t0010	679	1	0	0	1	0	0	copy fasta	KLK3	chr19	50849915	50865764
KLK4_chr19_50901351_50916395	1/0	t0001	652	147	7	13	116	1	9	copy fasta	KLK4	chr19	50901351	50916395
KLK4_chr19_50901351_50916395	0/0	t0002	719	108	30	24	36	7	11	copy fasta	KLK4	chr19	50901351	50916395
KLK4_chr19_50901351_50916395	0/1	t0003	585	89	24	36	6	6	16	copy fasta	KLK4	chr19	50901351	50916395
KLK4_chr19_50901351_50916395	0/0	t0004	719	31	8	7	3	3	10	copy fasta	KLK4	chr19	50901351	50916395
KLK4_chr19_50901351_50916395	0/0	t0005	719	23	21	2	0	0	0	copy fasta	KLK4	chr19	50901351	50916395
KLK4_chr19_50901351_50916395	0/0	t0006	681	3	3	0	0	0	0	copy fasta	KLK4	chr19	50901351	50916395
KLK4_chr19_50901351_50916395	0/0	t0007	547	3	0	0	3	0	0	copy fasta	KLK4	chr19	50901351	50916395
KLK4_chr19_50901351_50916395	0/0	t0008	681	3	0	2	0	1	0	copy fasta	KLK4	chr19	50901351	50916395
KLK4_chr19_50901351_50916395	0/0	t0009	719	2	2	0	0	0	0	copy fasta	KLK4	chr19	50901351	50916395
KLK4_chr19_50901351_50916395	0/0	t0010	585	2	2	0	0	0	0	copy fasta	KLK4	chr19	50901351	50916395
KLK4_chr19_50901351_50916395	0/0	t0011	719	1	0	0	1	0	0	copy fasta	KLK4	chr19	50901351	50916395
KLK4_chr19_50901351_50916395	0/0	t0012	652	1	0	0	1	0	0	copy fasta	KLK4	chr19	50901351	50916395
KLK4_chr19_50901351_50916395	0/0	t0013	622	1	1	0	0	0	0	copy fasta	KLK4	chr19	50901351	50916395
KLK5_chr19_50938303_50958038	0/0	t0001	631	169	7	30	108	6	18	copy fasta	KLK5	chr19	50938303	50958038
KLK5_chr19_50938303_50958038	1/1	t0002	632	121	20	33	38	5	23	copy fasta	KLK5	chr19	50938303	50958038
KLK5_chr19_50938303_50958038	0/0	t0003	632	38	32	3	0	1	2	copy fasta	KLK5	chr19	50938303	50958038
KLK5_chr19_50938303_50958038	0/0	t0004	631	14	13	1	0	0	0	copy fasta	KLK5	chr19	50938303	50958038
KLK5_chr19_50938303_50958038	0/0	t0005	631	13	0	6	6	1	0	copy fasta	KLK5	chr19	50938303	50958038
KLK5_chr19_50938303_50958038	0/0	t0006	632	9	3	2	3	1	0	copy fasta	KLK5	chr19	50938303	50958038
KLK5_chr19_50938303_50958038	0/0	t0007	632	4	4	0	0	0	0	copy fasta	KLK5	chr19	50938303	50958038