Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AP3M2_chr8_42148063_42176183	0/0	t0024	2238	1	0	0	0	0	1	copy fasta	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	t0025	2238	1	0	1	0	0	0	copy fasta	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	t0026	2238	1	1	0	0	0	0	copy fasta	AP3M2	chr8	42148063	42176183
AP3S1_chr5_115836935_115919081	1/1	t0001	695	359	75	70	158	14	40	copy fasta	AP3S1	chr5	115836935	115919081
AP3S1_chr5_115836935_115919081	0/0	t0002	695	8	8	0	0	0	0	copy fasta	AP3S1	chr5	115836935	115919081
AP3S1_chr5_115836935_115919081	0/0	t0003	695	5	1	2	0	0	2	copy fasta	AP3S1	chr5	115836935	115919081
AP3S1_chr5_115836935_115919081	0/0	t0004	695	3	3	0	0	0	0	copy fasta	AP3S1	chr5	115836935	115919081
AP3S1_chr5_115836935_115919081	0/0	t0005	696	3	3	0	0	0	0	copy fasta	AP3S1	chr5	115836935	115919081
AP3S2_chr15_89825599_89898994	0/0	t0001	4963	77	8	28	22	9	10	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0002	4960	76	26	13	28	2	7	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	1/0	t0003	4962	48	2	9	25	0	11	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0004	4960	13	0	4	9	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0005	4961	12	8	3	1	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0006	4961	10	0	0	10	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0007	4963	8	7	0	1	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0008	4962	5	0	4	0	1	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0009	4964	4	4	0	0	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0010	4964	4	1	0	2	0	1	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0011	4962	4	0	2	2	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0012	4972	3	3	0	0	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0013	4962	3	3	0	0	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0014	4963	3	2	1	0	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0015	4963	3	0	1	1	0	1	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0016	4961	3	3	0	0	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0017	4963	2	2	0	0	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0018	4962	2	2	0	0	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0019	4961	2	1	0	1	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0020	4960	2	0	0	2	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0021	4959	2	0	1	1	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0022	4964	2	0	0	1	0	1	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0023	4959	1	1	0	0	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0024	4962	1	0	0	1	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0025	4963	1	1	0	0	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0026	4962	1	1	0	0	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0027	4962	1	0	0	0	1	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0028	4962	1	0	0	1	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0029	4960	1	1	0	0	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0030	4960	1	0	0	1	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0031	4961	1	0	0	1	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0032	4960	1	0	1	0	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0033	4960	1	0	1	0	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0034	4963	1	0	0	0	0	1	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0035	4961	1	1	0	0	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0036	4963	1	1	0	0	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0037	4963	1	0	1	0	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/1	t0038	4963	1	0	0	0	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0039	4963	1	0	1	0	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0040	4960	1	0	0	0	1	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0041	4962	1	0	0	1	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0042	4960	1	0	0	1	0	0	copy fasta	AP3S2	chr15	89825599	89898994