JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLK5_chr19_50938303_50958038	0/0	t0008	631	2	2	0	0	0	0	copy fasta	KLK5	chr19	50938303	50958038
KLK5_chr19_50938303_50958038	0/0	t0009	632	2	2	0	0	0	0	copy fasta	KLK5	chr19	50938303	50958038
KLK5_chr19_50938303_50958038	0/0	t0010	632	2	2	0	0	0	0	copy fasta	KLK5	chr19	50938303	50958038
KLK5_chr19_50938303_50958038	0/0	t0011	631	1	0	0	1	0	0	copy fasta	KLK5	chr19	50938303	50958038
KLK5_chr19_50938303_50958038	0/0	t0012	632	1	1	0	0	0	0	copy fasta	KLK5	chr19	50938303	50958038
KLK5_chr19_50938303_50958038	0/0	t0013	632	1	0	0	0	0	1	copy fasta	KLK5	chr19	50938303	50958038
KLK5_chr19_50938303_50958038	0/0	t0014	632	1	0	1	0	0	0	copy fasta	KLK5	chr19	50938303	50958038
KLK5_chr19_50938303_50958038	0/0	t0015	632	1	1	0	0	0	0	copy fasta	KLK5	chr19	50938303	50958038
KLK5_chr19_50938303_50958038	0/0	t0016	631	1	1	0	0	0	0	copy fasta	KLK5	chr19	50938303	50958038
KLK6_chr19_50953631_50974591	0/1	t0001	696	309	85	73	104	14	32	copy fasta	KLK6	chr19	50953631	50974591
KLK6_chr19_50953631_50974591	0/0	t0002	696	1	0	0	1	0	0	copy fasta	KLK6	chr19	50953631	50974591
KLK6_chr19_50953631_50974591	1/0	t0003	695	1	0	0	0	0	0	copy fasta	KLK6	chr19	50953631	50974591
KLK6_chr19_50953631_50974591	0/0	t0004	696	1	0	0	1	0	0	copy fasta	KLK6	chr19	50953631	50974591
KLK6_chr19_50953631_50974591	0/0	t0005	696	1	0	1	0	0	0	copy fasta	KLK6	chr19	50953631	50974591
KLK6_chr19_50953631_50974591	0/0	t0006	696	1	0	0	1	0	0	copy fasta	KLK6	chr19	50953631	50974591
KLK6_chr19_50953631_50974591	0/0	t0007	686	1	1	0	0	0	0	copy fasta	KLK6	chr19	50953631	50974591
KLK6_chr19_50953631_50974591	0/0	t0008	778	1	0	0	1	0	0	copy fasta	KLK6	chr19	50953631	50974591
KLK7_chr19_50971468_50988917	0/1	t0001	1190	171	22	40	81	7	20	copy fasta	KLK7	chr19	50971468	50988917
KLK7_chr19_50971468_50988917	1/0	t0002	1194	153	29	26	75	5	17	copy fasta	KLK7	chr19	50971468	50988917
KLK7_chr19_50971468_50988917	0/0	t0003	1190	20	20	0	0	0	0	copy fasta	KLK7	chr19	50971468	50988917
KLK7_chr19_50971468_50988917	0/0	t0004	1190	11	9	1	0	0	1	copy fasta	KLK7	chr19	50971468	50988917
KLK7_chr19_50971468_50988917	0/0	t0005	1190	8	8	0	0	0	0	copy fasta	KLK7	chr19	50971468	50988917
KLK7_chr19_50971468_50988917	0/0	t0006	1190	7	4	2	0	0	1	copy fasta	KLK7	chr19	50971468	50988917
KLK7_chr19_50971468_50988917	0/0	t0007	1190	2	1	1	0	0	0	copy fasta	KLK7	chr19	50971468	50988917
KLK7_chr19_50971468_50988917	0/0	t0008	1190	2	0	0	2	0	0	copy fasta	KLK7	chr19	50971468	50988917
KLK7_chr19_50971468_50988917	0/0	t0009	1194	1	0	0	0	0	1	copy fasta	KLK7	chr19	50971468	50988917
KLK7_chr19_50971468_50988917	0/0	t0010	1194	1	0	0	1	0	0	copy fasta	KLK7	chr19	50971468	50988917
KLK7_chr19_50971468_50988917	0/0	t0011	1194	1	0	1	0	0	0	copy fasta	KLK7	chr19	50971468	50988917
KLK7_chr19_50971468_50988917	0/0	t0012	1194	1	0	0	1	0	0	copy fasta	KLK7	chr19	50971468	50988917
KLK7_chr19_50971468_50988917	0/0	t0013	1210	1	0	0	1	0	0	copy fasta	KLK7	chr19	50971468	50988917
KLK7_chr19_50971468_50988917	0/0	t0014	1194	1	1	0	0	0	0	copy fasta	KLK7	chr19	50971468	50988917
KLK7_chr19_50971468_50988917	0/0	t0015	1190	1	0	1	0	0	0	copy fasta	KLK7	chr19	50971468	50988917
KLK7_chr19_50971468_50988917	0/0	t0016	1190	1	1	0	0	0	0	copy fasta	KLK7	chr19	50971468	50988917
KLK7_chr19_50971468_50988917	0/0	t0017	1190	1	1	0	0	0	0	copy fasta	KLK7	chr19	50971468	50988917
KLK7_chr19_50971468_50988917	0/0	t0018	1194	1	0	0	1	0	0	copy fasta	KLK7	chr19	50971468	50988917
KLK8_chr19_50991008_51006604	1/1	t0001	133	416	96	68	201	8	41	copy fasta	KLK8	chr19	50991008	51006604
KLK8_chr19_50991008_51006604	0/0	t0002	133	2	0	1	0	0	1	copy fasta	KLK8	chr19	50991008	51006604
KLK8_chr19_50991008_51006604	0/0	t0003	133	1	0	1	0	0	0	copy fasta	KLK8	chr19	50991008	51006604
KLK8_chr19_50991008_51006604	0/0	t0004	133	1	0	0	1	0	0	copy fasta	KLK8	chr19	50991008	51006604
KLK9_chr19_50997508_51014592	1/0	t0001	649	254	22	42	156	4	29	copy fasta	KLK9	chr19	50997508	51014592
KLK9_chr19_50997508_51014592	0/1	t0002	649	126	42	24	42	6	11	copy fasta	KLK9	chr19	50997508	51014592
KLK9_chr19_50997508_51014592	0/0	t0003	649	14	9	5	0	0	0	copy fasta	KLK9	chr19	50997508	51014592
KLK9_chr19_50997508_51014592	0/0	t0004	649	12	10	1	0	0	1	copy fasta	KLK9	chr19	50997508	51014592
KLK9_chr19_50997508_51014592	0/0	t0005	649	8	2	3	0	0	3	copy fasta	KLK9	chr19	50997508	51014592
KLK9_chr19_50997508_51014592	0/0	t0006	649	7	4	3	0	0	0	copy fasta	KLK9	chr19	50997508	51014592
KLK9_chr19_50997508_51014592	0/0	t0007	649	5	5	0	0	0	0	copy fasta	KLK9	chr19	50997508	51014592
KLK9_chr19_50997508_51014592	0/0	t0008	649	3	0	0	3	0	0	copy fasta	KLK9	chr19	50997508	51014592
KLK9_chr19_50997508_51014592	0/0	t0009	649	2	2	0	0	0	0	copy fasta	KLK9	chr19	50997508	51014592
KLK9_chr19_50997508_51014592	0/0	t0010	649	1	0	0	1	0	0	copy fasta	KLK9	chr19	50997508	51014592
KLK9_chr19_50997508_51014592	0/0	t0011	649	1	0	0	1	0	0	copy fasta	KLK9	chr19	50997508	51014592