JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLK9_chr19_50997508_51014592	0/0	t0012	649	1	0	0	1	0	0	copy fasta	KLK9	chr19	50997508	51014592
KLK9_chr19_50997508_51014592	0/0	t0013	649	1	0	0	1	0	0	copy fasta	KLK9	chr19	50997508	51014592
KLK9_chr19_50997508_51014592	0/0	t0014	649	1	0	0	1	0	0	copy fasta	KLK9	chr19	50997508	51014592
KLK9_chr19_50997508_51014592	0/0	t0015	649	1	0	0	1	0	0	copy fasta	KLK9	chr19	50997508	51014592
KLK9_chr19_50997508_51014592	0/0	t0016	649	1	0	0	1	0	0	copy fasta	KLK9	chr19	50997508	51014592
KLKB1_chr4_186222507_186263471	0/1	t0001	341	381	74	68	182	16	40	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	1/0	t0002	341	36	7	11	12	0	5	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	t0003	341	5	3	2	0	0	0	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	t0004	341	2	0	0	2	0	0	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	t0005	341	2	2	0	0	0	0	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	t0006	341	1	1	0	0	0	0	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	t0007	341	1	1	0	0	0	0	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	t0008	341	1	0	0	0	0	1	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	t0009	341	1	0	1	0	0	0	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	t0010	341	1	1	0	0	0	0	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	t0011	341	1	1	0	0	0	0	copy fasta	KLKB1	chr4	186222507	186263471
KLLN_chr10_87854158_87868533	1/1	t0001	3840	221	50	42	95	9	23	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0002	3840	63	3	5	45	2	8	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0003	3841	16	1	6	6	1	2	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0004	3839	15	0	10	5	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0005	3839	13	7	4	0	0	2	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0006	3841	13	0	0	13	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0007	3840	11	0	0	10	0	1	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0008	3840	10	0	0	10	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0009	3840	9	0	0	9	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0010	3839	7	4	2	1	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0011	3840	5	5	0	0	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0012	3840	4	3	1	0	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0013	3840	3	3	0	0	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0014	3840	3	3	0	0	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0015	3840	2	1	1	0	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0016	3840	2	2	0	0	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0017	3840	2	0	0	2	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0018	3839	2	2	0	0	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0019	3840	2	2	0	0	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0020	3840	1	1	0	0	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0021	3839	1	0	0	0	0	1	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0022	3840	1	1	0	0	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0023	3840	1	1	0	0	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0024	3839	1	1	0	0	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0025	3841	1	0	1	0	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0026	3839	1	0	0	0	0	1	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0027	3841	1	0	0	1	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0028	3840	1	0	0	1	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0029	3839	1	0	0	0	0	1	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0030	3839	1	0	0	1	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0031	3839	1	0	0	1	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0032	3840	1	0	1	0	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0033	2995	1	1	0	0	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0034	3840	1	0	0	0	0	1	copy fasta	KLLN	chr10	87854158	87868533