JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLLN_chr10_87854158_87868533	0/0	t0035	3841	1	1	0	0	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0036	3841	1	0	0	1	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0037	3840	1	0	0	1	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0038	3840	1	1	0	0	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0039	3840	1	0	0	1	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0040	3840	1	0	1	0	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0041	3840	1	0	0	1	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0042	3840	1	0	0	1	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0043	3840	1	0	0	1	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0044	3840	1	1	0	0	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0045	3840	1	0	0	1	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	t0046	3840	1	0	0	1	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLRB1_chr12_9589551_9612916	0/0	t0001	797	186	17	33	110	2	24	copy fasta	KLRB1	chr12	9589551	9612916
KLRB1_chr12_9589551_9612916	0/1	t0002	801	153	5	27	86	12	22	copy fasta	KLRB1	chr12	9589551	9612916
KLRB1_chr12_9589551_9612916	0/0	t0003	801	35	30	5	0	0	0	copy fasta	KLRB1	chr12	9589551	9612916
KLRB1_chr12_9589551_9612916	0/0	t0004	798	18	16	0	0	1	1	copy fasta	KLRB1	chr12	9589551	9612916
KLRB1_chr12_9589551_9612916	0/0	t0005	806	16	14	2	0	0	0	copy fasta	KLRB1	chr12	9589551	9612916
KLRB1_chr12_9589551_9612916	0/0	t0006	801	7	3	4	0	0	0	copy fasta	KLRB1	chr12	9589551	9612916
KLRB1_chr12_9589551_9612916	0/0	t0007	801	7	0	5	0	1	1	copy fasta	KLRB1	chr12	9589551	9612916
KLRB1_chr12_9589551_9612916	0/0	t0008	801	6	0	0	6	0	0	copy fasta	KLRB1	chr12	9589551	9612916
KLRB1_chr12_9589551_9612916	1/0	t0009	801	4	3	0	0	0	0	copy fasta	KLRB1	chr12	9589551	9612916
KLRB1_chr12_9589551_9612916	0/0	t0010	798	1	1	0	0	0	0	copy fasta	KLRB1	chr12	9589551	9612916
KLRB1_chr12_9589551_9612916	0/0	t0011	801	1	0	1	0	0	0	copy fasta	KLRB1	chr12	9589551	9612916
KLRB1_chr12_9589551_9612916	0/0	t0012	801	1	0	1	0	0	0	copy fasta	KLRB1	chr12	9589551	9612916
KLRB1_chr12_9589551_9612916	0/0	t0013	801	1	1	0	0	0	0	copy fasta	KLRB1	chr12	9589551	9612916
KLRC1_chr12_10441028_10458377	1/0	t0001	735	230	26	47	120	15	21	copy fasta	KLRC1	chr12	10441028	10458377
KLRC1_chr12_10441028_10458377	0/1	t0002	730	95	29	10	49	1	5	copy fasta	KLRC1	chr12	10441028	10458377
KLRC1_chr12_10441028_10458377	0/0	t0003	734	83	22	13	37	0	11	copy fasta	KLRC1	chr12	10441028	10458377
KLRC1_chr12_10441028_10458377	0/0	t0004	730	10	7	3	0	0	0	copy fasta	KLRC1	chr12	10441028	10458377
KLRC1_chr12_10441028_10458377	0/0	t0005	729	9	9	0	0	0	0	copy fasta	KLRC1	chr12	10441028	10458377
KLRC1_chr12_10441028_10458377	0/0	t0006	735	3	3	0	0	0	0	copy fasta	KLRC1	chr12	10441028	10458377
KLRC1_chr12_10441028_10458377	0/0	t0007	735	2	0	0	2	0	0	copy fasta	KLRC1	chr12	10441028	10458377
KLRC1_chr12_10441028_10458377	0/0	t0008	734	2	0	0	0	0	2	copy fasta	KLRC1	chr12	10441028	10458377
KLRC1_chr12_10441028_10458377	0/0	t0009	735	1	0	0	1	0	0	copy fasta	KLRC1	chr12	10441028	10458377
KLRC1_chr12_10441028_10458377	0/0	t0010	730	1	1	0	0	0	0	copy fasta	KLRC1	chr12	10441028	10458377
KLRC1_chr12_10441028_10458377	0/0	t0011	735	1	0	0	1	0	0	copy fasta	KLRC1	chr12	10441028	10458377
KLRC1_chr12_10441028_10458377	0/0	t0012	734	1	0	0	0	0	1	copy fasta	KLRC1	chr12	10441028	10458377
KLRC1_chr12_10441028_10458377	0/0	t0013	735	1	0	1	0	0	0	copy fasta	KLRC1	chr12	10441028	10458377
KLRC1_chr12_10441028_10458377	0/0	t0014	735	1	1	0	0	0	0	copy fasta	KLRC1	chr12	10441028	10458377
KLRC2_chr12_10425599_10441010	0/0	t0000	0	64	18	7	33	1	5	copy fasta	KLRC2	chr12	10425599	10441010
KLRC2_chr12_10425599_10441010	0/0	t0001	543	175	9	30	110	8	18	copy fasta	KLRC2	chr12	10425599	10441010
KLRC2_chr12_10425599_10441010	0/0	t0002	543	80	21	13	33	0	13	copy fasta	KLRC2	chr12	10425599	10441010
KLRC2_chr12_10425599_10441010	1/0	t0003	543	53	19	17	11	2	3	copy fasta	KLRC2	chr12	10425599	10441010
KLRC2_chr12_10425599_10441010	0/0	t0004	543	24	6	10	1	4	3	copy fasta	KLRC2	chr12	10425599	10441010
KLRC2_chr12_10425599_10441010	0/0	t0005	543	23	20	3	0	0	0	copy fasta	KLRC2	chr12	10425599	10441010
KLRC2_chr12_10425599_10441010	0/0	t0006	543	3	3	0	0	0	0	copy fasta	KLRC2	chr12	10425599	10441010
KLRC2_chr12_10425599_10441010	0/0	t0007	543	2	0	0	2	0	0	copy fasta	KLRC2	chr12	10425599	10441010
KLRC2_chr12_10425599_10441010	0/0	t0008	543	1	0	0	0	1	0	copy fasta	KLRC2	chr12	10425599	10441010
KLRC3_chr12_10407315_10425595	1/1	t0001	303	415	87	72	203	14	37	copy fasta	KLRC3	chr12	10407315	10425595
KLRC3_chr12_10407315_10425595	0/0	t0002	303	28	6	10	1	4	7	copy fasta	KLRC3	chr12	10407315	10425595