JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLRC3_chr12_10407315_10425595	0/0	t0003	303	4	4	0	0	0	0	copy fasta	KLRC3	chr12	10407315	10425595
KLRC3_chr12_10407315_10425595	0/0	t0004	258	1	1	0	0	0	0	copy fasta	KLRC3	chr12	10407315	10425595
KLRC4_chr12_10402384_10414757	1/1	t0001	452	437	93	82	201	16	43	copy fasta	KLRC4	chr12	10402384	10414757
KLRC4_chr12_10402384_10414757	0/0	t0002	452	5	5	0	0	0	0	copy fasta	KLRC4	chr12	10402384	10414757
KLRC4_chr12_10402384_10414757	0/0	t0003	452	2	0	0	0	0	2	copy fasta	KLRC4	chr12	10402384	10414757
KLRC4_chr12_10402384_10414757	0/0	t0004	452	1	0	0	0	0	1	copy fasta	KLRC4	chr12	10402384	10414757
KLRC4_chr12_10402384_10414757	0/0	t0005	452	1	0	0	1	0	0	copy fasta	KLRC4	chr12	10402384	10414757
KLRD1_chr12_10302870_10334608	0/0	t0001	15044	9	0	1	7	0	1	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0002	15047	8	0	1	6	0	1	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0003	15052	8	0	5	2	0	1	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0004	15050	8	0	5	1	1	1	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0005	15050	6	0	0	5	0	1	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0006	15049	5	0	0	5	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0007	15041	5	5	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0008	15050	5	0	0	5	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0009	15030	5	5	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0010	15049	4	0	0	3	0	1	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0011	15039	4	0	0	3	0	1	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0012	15050	4	1	1	0	1	1	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0013	15050	4	0	0	3	0	1	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0014	15044	4	0	0	4	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0015	15040	4	0	0	4	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0016	15024	3	3	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0017	15048	3	0	2	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0018	15047	3	1	2	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	1/0	t0019	15024	3	1	1	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0020	15058	3	0	1	0	0	2	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0021	15052	3	0	0	1	0	2	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0022	15044	3	0	1	2	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0023	15050	3	0	0	1	0	2	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0024	15052	3	0	0	2	0	1	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0025	15036	2	2	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0026	15054	2	0	0	2	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0027	15046	2	0	0	2	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0028	15045	2	0	0	2	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0029	15040	2	0	1	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0030	15047	2	0	2	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0031	15049	2	0	0	0	0	2	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0032	15045	2	0	2	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0033	15046	2	0	1	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0034	15044	2	0	0	2	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0035	15044	2	0	0	2	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0036	15042	2	0	0	2	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0037	15046	2	0	0	2	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0038	15051	2	0	1	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0039	15049	2	0	0	2	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0040	15045	2	0	0	2	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0041	15032	2	2	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0042	15043	2	2	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0043	15029	2	2	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608