JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLRD1_chr12_10302870_10334608	0/0	t0044	15031	2	2	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0045	15052	2	0	2	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/1	t0046	15048	2	0	0	0	0	1	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0047	15048	2	0	2	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0048	15042	2	0	0	2	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0049	15048	2	0	0	2	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0050	15052	2	0	2	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0051	15047	2	0	2	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0052	15039	2	2	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0053	15043	2	1	0	0	1	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0054	15041	2	2	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0055	15044	2	0	2	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0056	15054	2	0	2	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0057	15023	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0058	15026	1	0	1	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0059	15023	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0060	15047	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0061	15053	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0062	15051	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0063	15046	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0064	15044	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0065	15050	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0066	15050	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0067	15040	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0068	15039	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0069	15044	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0070	15038	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0071	15038	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0072	15041	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0073	15035	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0074	15033	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0075	15045	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0076	15050	1	0	1	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0077	15050	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0078	15041	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0079	15050	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0080	15050	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0081	15050	1	0	0	0	0	1	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0082	15048	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0083	15049	1	0	1	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0084	15055	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0085	15045	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0086	15043	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0087	15042	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0088	15048	1	0	1	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0089	15035	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0090	15044	1	0	1	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0091	15042	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0092	15040	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0093	15045	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608