JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLRD1_chr12_10302870_10334608	0/0	t0194	15049	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0195	15049	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0196	15050	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0197	15043	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0198	15044	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0199	15044	1	0	1	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0200	15056	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0201	15051	1	0	0	0	1	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0202	15051	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0203	15049	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0204	15053	1	0	1	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0205	15049	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0206	15053	1	0	0	0	0	1	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0207	15049	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0208	15049	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0209	15051	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0210	15051	1	0	0	0	0	1	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0211	15049	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0212	15045	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0213	15047	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0214	15056	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0215	15054	1	0	1	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0216	15048	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0217	15052	1	0	0	0	0	1	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0218	15051	1	0	0	0	0	1	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0219	15047	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0220	15054	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0221	15060	1	0	1	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0222	15056	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0223	15054	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0224	15054	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0225	15054	1	0	0	0	0	1	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0226	15052	1	0	0	0	1	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0227	15052	1	0	1	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0228	15052	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0229	15050	1	0	1	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0230	15050	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0231	15048	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0232	15046	1	0	0	0	0	1	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0233	15046	1	0	1	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0234	15044	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0235	15050	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0236	15048	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0237	15033	1	0	1	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0238	15051	1	0	1	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0239	15049	1	0	0	0	0	1	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0240	15049	1	0	1	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0241	15045	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0242	15043	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0243	15044	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608