JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLRD1_chr12_10302870_10334608	0/0	t0244	15052	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0245	15048	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0246	15040	1	0	1	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0247	15050	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0248	15048	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0249	15046	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0250	15054	1	0	0	0	1	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0251	15042	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0252	15049	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0253	15050	1	0	1	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0254	15048	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0255	15046	1	0	0	0	0	1	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0256	15044	1	0	1	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0257	15042	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0258	15042	1	0	0	0	0	1	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0259	15052	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0260	15052	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0261	15050	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0262	15050	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0263	15048	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0264	15048	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0265	15046	1	0	0	0	0	1	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0266	15044	1	0	0	0	0	1	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0267	15044	1	0	0	0	0	1	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0268	15042	1	0	0	0	0	1	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0269	15042	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0270	15048	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0271	15052	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0272	15050	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0273	15049	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0274	15052	1	0	0	0	0	1	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0275	15053	1	0	0	0	0	1	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0276	15053	1	0	0	0	0	1	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0277	15045	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0278	15051	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0279	15051	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0280	15048	1	0	0	0	0	1	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0281	15052	1	0	0	0	0	1	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0282	15052	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0283	15048	1	0	1	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0284	15041	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0285	15041	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0286	15041	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0287	15039	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0288	15039	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0289	15037	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0290	15035	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0291	15046	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0292	15024	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0293	15044	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608