JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLRD1_chr12_10302870_10334608	0/0	t0294	15040	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0295	15041	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0296	15041	1	0	1	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0297	15031	1	0	0	0	0	1	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0298	15046	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0299	15048	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0300	15046	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0301	15041	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0302	15042	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0303	15036	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0304	15039	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0305	15035	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0306	15039	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0307	15035	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0308	15052	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0309	15046	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	t0310	15031	1	1	0	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRF1_chr12_9822481_9850005	1/1	t0001	544	338	76	67	137	16	40	copy fasta	KLRF1	chr12	9822481	9850005
KLRF1_chr12_9822481_9850005	0/0	t0002	544	49	20	11	11	2	5	copy fasta	KLRF1	chr12	9822481	9850005
KLRF1_chr12_9822481_9850005	0/0	t0003	544	1	0	0	0	0	1	copy fasta	KLRF1	chr12	9822481	9850005
KLRF2_chr12_9876489_9900833	1/1	t0001	108	440	98	78	198	18	46	copy fasta	KLRF2	chr12	9876489	9900833
KLRG1_chr12_8984546_9015751	1/1	t0001	1305	205	51	32	83	10	27	copy fasta	KLRG1	chr12	8984546	9015751
KLRG1_chr12_8984546_9015751	0/0	t0002	1305	109	3	20	72	3	11	copy fasta	KLRG1	chr12	8984546	9015751
KLRG1_chr12_8984546_9015751	0/0	t0003	1304	14	6	7	0	0	1	copy fasta	KLRG1	chr12	8984546	9015751
KLRG1_chr12_8984546_9015751	0/0	t0004	1306	12	9	2	1	0	0	copy fasta	KLRG1	chr12	8984546	9015751
KLRG1_chr12_8984546_9015751	0/0	t0005	1305	6	3	3	0	0	0	copy fasta	KLRG1	chr12	8984546	9015751
KLRG1_chr12_8984546_9015751	0/0	t0006	1305	4	4	0	0	0	0	copy fasta	KLRG1	chr12	8984546	9015751
KLRG1_chr12_8984546_9015751	0/0	t0007	1306	4	4	0	0	0	0	copy fasta	KLRG1	chr12	8984546	9015751
KLRG1_chr12_8984546_9015751	0/0	t0008	1305	3	1	0	0	1	1	copy fasta	KLRG1	chr12	8984546	9015751
KLRG1_chr12_8984546_9015751	0/0	t0009	1305	2	2	0	0	0	0	copy fasta	KLRG1	chr12	8984546	9015751
KLRG1_chr12_8984546_9015751	0/0	t0010	1305	2	0	0	2	0	0	copy fasta	KLRG1	chr12	8984546	9015751
KLRG1_chr12_8984546_9015751	0/0	t0011	1305	1	0	0	1	0	0	copy fasta	KLRG1	chr12	8984546	9015751
KLRG1_chr12_8984546_9015751	0/0	t0012	1305	1	0	0	1	0	0	copy fasta	KLRG1	chr12	8984546	9015751
KLRG1_chr12_8984546_9015751	0/0	t0013	1305	1	1	0	0	0	0	copy fasta	KLRG1	chr12	8984546	9015751
KLRG2_chr7_139447690_139488673	1/1	t0001	929	299	68	53	141	7	28	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	t0002	929	61	14	15	17	6	9	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	t0003	929	21	3	0	18	0	0	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	t0004	929	7	0	0	7	0	0	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	t0005	927	5	0	2	0	2	1	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	t0006	929	3	3	0	0	0	0	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	t0007	929	2	0	0	0	0	2	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	t0008	929	1	1	0	0	0	0	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	t0009	929	1	1	0	0	0	0	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	t0010	929	1	0	0	1	0	0	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	t0011	929	1	0	0	0	1	0	copy fasta	KLRG2	chr7	139447690	139488673
KLRK1_chr12_10367353_10395041	0/0	t0001	922	186	18	38	104	12	14	copy fasta	KLRK1	chr12	10367353	10395041
KLRK1_chr12_10367353_10395041	0/0	t0002	922	83	20	10	39	0	14	copy fasta	KLRK1	chr12	10367353	10395041
KLRK1_chr12_10367353_10395041	1/1	t0003	926	74	22	15	25	2	8	copy fasta	KLRK1	chr12	10367353	10395041
KLRK1_chr12_10367353_10395041	0/0	t0004	922	30	1	0	29	0	0	copy fasta	KLRK1	chr12	10367353	10395041
KLRK1_chr12_10367353_10395041	0/0	t0005	922	27	6	11	2	4	4	copy fasta	KLRK1	chr12	10367353	10395041