Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AP3S2_chr15_89825599_89898994	0/0	t0043	4960	1	0	1	0	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0044	4963	1	1	0	0	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0045	4960	1	1	0	0	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	t0046	4963	1	0	1	0	0	0	copy fasta	AP3S2	chr15	89825599	89898994
AP4B1_chr1_113889194_113909799	0/0	t0001	954	205	6	35	144	7	13	copy fasta	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	1/1	t0002	954	171	59	28	54	7	21	copy fasta	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	t0003	954	43	13	13	5	2	10	copy fasta	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	t0004	954	9	8	1	0	0	0	copy fasta	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	t0005	954	2	2	0	0	0	0	copy fasta	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	t0006	954	1	0	1	0	0	0	copy fasta	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	t0007	954	1	0	0	1	0	0	copy fasta	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	t0008	954	1	0	0	1	0	0	copy fasta	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	t0009	954	1	0	0	1	0	0	copy fasta	AP4B1	chr1	113889194	113909799
AP4E1_chr15_50903683_51010895	1/0	t0001	3330	114	16	24	62	1	10	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	t0002	3330	89	2	12	65	4	6	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/1	t0003	3330	81	7	15	40	6	12	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	t0004	3330	39	14	12	3	3	7	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	t0005	3330	19	17	2	0	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	t0006	3330	7	6	1	0	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	t0007	3330	4	4	0	0	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	t0008	3330	4	4	0	0	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	t0009	3330	4	4	0	0	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	t0010	3330	3	1	2	0	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	t0011	3330	2	2	0	0	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	t0012	3330	2	0	0	2	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	t0013	3330	2	0	2	0	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	t0014	3330	2	2	0	0	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	t0015	3330	2	2	0	0	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	t0016	3330	2	0	0	2	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	t0017	3330	2	0	1	0	0	1	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	t0018	3330	2	2	0	0	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	t0019	3330	2	0	0	2	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	t0020	3348	1	0	0	0	0	1	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	t0021	3330	1	1	0	0	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	t0022	3330	1	1	0	0	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	t0023	3330	1	0	1	0	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	t0024	3330	1	0	0	0	0	1	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	t0025	3330	1	0	1	0	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	t0026	3330	1	1	0	0	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	t0027	3330	1	1	0	0	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	t0028	3330	1	1	0	0	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4E1_chr15_50903683_51010895	0/0	t0029	3318	1	0	1	0	0	0	copy fasta	AP4E1	chr15	50903683	51010895
AP4M1_chr7_100096643_100114039	0/0	t0001	2230	216	18	34	132	6	26	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	1/0	t0002	2230	103	34	22	28	10	8	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	t0003	2229	21	3	4	10	1	3	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	t0004	2230	9	8	1	0	0	0	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/1	t0005	2230	5	0	2	0	0	2	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	t0006	2229	5	2	3	0	0	0	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	t0007	2232	5	5	0	0	0	0	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	t0008	2230	5	0	0	5	0	0	copy fasta	AP4M1	chr7	100096643	100114039