JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLRK1_chr12_10367353_10395041	0/0	t0006	926	24	20	4	0	0	0	copy fasta	KLRK1	chr12	10367353	10395041
KLRK1_chr12_10367353_10395041	0/0	t0007	926	7	4	3	0	0	0	copy fasta	KLRK1	chr12	10367353	10395041
KLRK1_chr12_10367353_10395041	0/0	t0008	926	3	3	0	0	0	0	copy fasta	KLRK1	chr12	10367353	10395041
KLRK1_chr12_10367353_10395041	0/0	t0009	922	1	0	0	1	0	0	copy fasta	KLRK1	chr12	10367353	10395041
KLRK1_chr12_10367353_10395041	0/0	t0010	922	1	0	1	0	0	0	copy fasta	KLRK1	chr12	10367353	10395041
KLRK1_chr12_10367353_10395041	0/0	t0011	922	1	0	0	1	0	0	copy fasta	KLRK1	chr12	10367353	10395041
KLRK1_chr12_10367353_10395041	0/0	t0012	922	1	0	0	1	0	0	copy fasta	KLRK1	chr12	10367353	10395041
KL_chr13_33011423_33071143	1/1	t0001	1976	367	74	59	182	12	38	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	t0002	1976	8	8	0	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	t0003	1976	5	4	1	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	t0004	1976	2	0	2	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	t0005	1976	1	1	0	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	t0006	1976	1	1	0	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	t0007	1976	1	0	1	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	t0008	1976	1	0	1	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	t0009	1976	1	1	0	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	t0010	1976	1	1	0	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	t0011	1976	1	0	0	0	0	1	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	t0012	1976	1	1	0	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	t0013	1976	1	1	0	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	t0014	1950	1	1	0	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	t0015	1976	1	1	0	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	t0016	1976	1	0	0	0	0	1	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	t0017	1976	1	1	0	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	t0018	1976	1	1	0	0	0	0	copy fasta	KL	chr13	33011423	33071143
KMO_chr1_241527378_241600642	0/0	t0001	3562	41	5	9	21	2	4	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	t0002	3561	37	16	5	14	0	2	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	t0003	3561	36	6	5	17	2	6	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	1/0	t0004	3557	32	6	2	20	0	3	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	t0005	3575	29	0	2	19	3	5	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	t0006	3561	22	4	6	6	2	4	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	t0007	3557	19	11	1	3	1	3	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	t0008	3557	19	4	3	10	0	2	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	t0009	3579	15	0	2	10	1	2	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	t0010	3558	15	8	2	3	0	2	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	t0011	3565	13	0	0	7	4	2	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	t0012	3561	13	0	0	12	0	1	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	t0013	3565	12	4	3	5	0	0	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	t0014	3571	10	0	2	7	0	1	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	t0015	3565	9	1	3	4	0	1	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	t0016	3567	6	0	5	1	0	0	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	t0017	3566	6	2	1	2	0	1	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	t0018	3554	6	3	0	1	1	1	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	t0019	3553	6	5	0	0	0	1	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	t0020	3561	5	5	0	0	0	0	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	t0021	3569	4	0	2	2	0	0	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	t0022	3558	4	0	4	0	0	0	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	t0023	3561	3	0	0	3	0	0	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	t0024	3583	2	0	0	2	0	0	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	t0025	3562	2	2	0	0	0	0	copy fasta	KMO	chr1	241527378	241600642