JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KMT2A_chr11_118431492_118531832	0/0	t0001	4682	80	30	8	31	0	11	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	1/0	t0002	4682	70	20	3	33	0	13	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/1	t0003	4682	17	1	4	8	0	3	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	t0004	4682	14	14	0	0	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	t0005	4682	3	3	0	0	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	t0006	4682	3	3	0	0	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	t0007	4682	2	2	0	0	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	t0008	4682	2	0	1	0	0	1	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	t0009	4682	1	0	0	1	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	t0010	4682	1	0	0	1	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	t0011	4682	1	0	0	1	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	t0012	4682	1	1	0	0	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	t0013	4682	1	0	0	1	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	t0014	4682	1	1	0	0	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	t0015	4682	1	0	0	1	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	t0016	4682	1	0	0	1	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	t0017	4682	1	1	0	0	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2B_chr19_35713003_35743878	1/1	t0001	338	360	86	71	151	9	41	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	t0002	338	15	6	0	9	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	t0003	338	14	4	0	2	3	5	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	t0004	338	7	0	3	0	2	2	copy fasta	KMT2B	chr19	35713003	35743878
KMT2C_chr7_152129925_152441003	1/1	t0001	2125	96	41	12	28	2	11	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	t0002	2125	51	19	9	18	0	5	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	t0003	2128	5	4	1	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	t0004	2124	5	5	0	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	t0005	2128	4	4	0	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	t0006	2125	4	4	0	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	t0007	2125	3	0	0	3	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	t0008	2125	1	1	0	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	t0009	2125	1	0	0	1	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	t0010	2125	1	1	0	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	t0011	2124	1	1	0	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2D_chr12_49013978_49065794	1/1	t0001	4022	168	30	32	81	7	16	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	t0002	4023	89	22	16	40	2	9	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	t0003	4022	13	13	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	t0004	4023	6	6	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	t0005	4022	4	3	1	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	t0006	4022	3	0	0	3	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	t0007	4023	2	2	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	t0008	4023	1	1	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	t0009	4022	1	1	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	t0010	4022	1	0	0	0	1	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	t0011	4011	1	0	1	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	t0012	4023	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	t0013	4023	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	t0014	4022	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	t0015	4022	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	t0016	4022	1	1	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	t0017	4023	1	1	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	t0018	4023	1	1	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794