JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KMT2D_chr12_49013978_49065794	0/0	t0019	4023	1	0	1	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	t0020	4022	1	0	1	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	t0021	4022	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	t0022	4009	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	t0023	4022	1	0	0	0	0	1	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	t0024	4023	1	1	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2E_chr7_105009205_105120019	1/1	t0001	2206	161	33	52	51	5	18	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	t0002	2205	98	30	18	44	1	5	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	t0003	2207	13	0	0	11	0	2	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	t0004	2206	7	7	0	0	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	t0005	2205	5	5	0	0	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	t0006	2201	3	2	1	0	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	t0007	2205	2	2	0	0	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	t0008	2206	2	2	0	0	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	t0009	2206	2	0	0	0	0	2	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	t0010	2205	1	0	0	1	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	t0011	2206	1	0	0	1	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	t0012	2205	1	0	0	1	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	t0013	2205	1	1	0	0	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	t0014	2206	1	1	0	0	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	t0015	2206	1	0	1	0	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	t0016	2206	1	1	0	0	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	t0017	2206	1	0	0	1	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	t0018	2205	1	0	0	1	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	t0019	2205	1	0	0	1	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	t0020	2206	1	0	0	0	0	1	copy fasta	KMT2E	chr7	105009205	105120019
KMT5A_chr12_123379132_123414353	0/0	t0001	1718	127	5	36	65	9	12	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/1	t0002	1718	35	12	13	0	2	7	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0003	1719	32	1	5	21	1	4	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0004	1719	22	0	4	14	0	4	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	1/0	t0005	1718	20	19	0	0	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0006	1720	10	10	0	0	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0007	1716	9	9	0	0	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0008	1716	9	8	1	0	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0009	1718	6	0	0	6	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0010	1719	6	0	1	3	0	2	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0011	1718	4	0	1	2	0	1	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0012	1720	4	0	0	4	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0013	1716	4	4	0	0	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0014	1718	3	1	1	0	0	1	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0015	1718	3	0	2	0	1	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0016	1719	3	2	1	0	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0017	1718	3	1	1	1	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0018	1719	3	0	2	0	1	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0019	1719	3	0	0	0	0	3	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0020	1720	3	0	0	3	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0021	1719	2	2	0	0	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0022	1720	2	2	0	0	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0023	1718	1	0	0	1	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0024	1720	1	1	0	0	0	0	copy fasta	KMT5A	chr12	123379132	123414353