JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KMT5A_chr12_123379132_123414353	0/0	t0025	1720	1	1	0	0	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0026	1718	1	0	0	1	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0027	1719	1	0	1	0	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0028	1718	1	1	0	0	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0029	1718	1	0	1	0	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0030	1718	1	1	0	0	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0031	1716	1	1	0	0	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0032	1721	1	1	0	0	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0033	1718	1	1	0	0	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0034	1718	1	0	0	1	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0035	1697	1	0	0	0	0	1	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0036	1719	1	0	0	1	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0037	1719	1	0	0	1	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0038	1721	1	0	0	1	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0039	1719	1	0	0	0	0	1	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0040	1720	1	1	0	0	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0041	1716	1	1	0	0	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0042	1719	1	1	0	0	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	t0043	1718	1	0	0	1	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5B_chr11_68149863_68218296	0/1	t0001	3061	232	69	29	103	5	25	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	1/0	t0002	3061	69	11	20	24	7	6	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	t0003	3060	6	1	0	4	1	0	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	t0004	3061	3	3	0	0	0	0	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	t0005	3061	2	2	0	0	0	0	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	t0006	3061	2	0	2	0	0	0	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	t0007	3061	2	0	0	2	0	0	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	t0008	3061	1	0	0	0	0	1	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	t0009	3061	1	0	0	1	0	0	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	t0010	3061	1	0	1	0	0	0	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	t0011	3061	1	0	0	0	0	1	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	t0012	3061	1	0	0	0	1	0	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	t0013	3061	1	0	0	0	0	1	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	t0014	3061	1	0	0	0	0	1	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	t0015	3061	1	0	0	1	0	0	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	t0016	3061	1	1	0	0	0	0	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	t0017	3061	1	0	0	0	0	1	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	t0018	3061	1	0	0	1	0	0	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	t0019	3061	1	1	0	0	0	0	copy fasta	KMT5B	chr11	68149863	68218296
KMT5C_chr19_55334876_55353121	0/0	t0001	898	218	46	36	106	7	23	copy fasta	KMT5C	chr19	55334876	55353121
KMT5C_chr19_55334876_55353121	1/1	t0002	898	156	47	35	46	5	21	copy fasta	KMT5C	chr19	55334876	55353121
KMT5C_chr19_55334876_55353121	0/0	t0003	898	29	1	1	23	4	0	copy fasta	KMT5C	chr19	55334876	55353121
KMT5C_chr19_55334876_55353121	0/0	t0004	898	1	0	1	0	0	0	copy fasta	KMT5C	chr19	55334876	55353121
KMT5C_chr19_55334876_55353121	0/0	t0005	898	1	0	0	1	0	0	copy fasta	KMT5C	chr19	55334876	55353121
KMT5C_chr19_55334876_55353121	0/0	t0006	898	1	0	1	0	0	0	copy fasta	KMT5C	chr19	55334876	55353121
KNCN_chr1_46540641_46556647	0/0	t0001	2522	112	24	16	54	4	14	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	t0002	2522	91	2	10	58	1	20	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	1/0	t0003	2522	45	1	0	40	1	2	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/1	t0004	2522	44	3	22	1	9	8	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	t0005	2522	42	25	9	8	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	t0006	2522	21	16	2	0	0	3	copy fasta	KNCN	chr1	46540641	46556647