JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KNCN_chr1_46540641_46556647	0/0	t0007	2522	8	7	1	0	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	t0008	2522	6	0	0	6	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	t0009	2522	4	4	0	0	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	t0010	2522	4	0	0	4	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	t0011	2522	4	4	0	0	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	t0012	2522	2	0	2	0	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	t0013	2522	2	0	0	2	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	t0014	2522	2	0	0	0	1	1	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	t0015	2522	2	0	0	1	0	1	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	t0016	2522	2	2	0	0	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	t0017	2522	2	2	0	0	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	t0018	2522	2	2	0	0	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	t0019	2522	2	2	0	0	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	t0020	2522	1	1	0	0	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	t0021	2522	1	0	0	0	0	1	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	t0022	2522	1	0	0	1	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	t0023	2522	1	0	0	1	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	t0024	2522	1	0	1	0	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	t0025	2522	1	1	0	0	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	t0026	2522	1	0	0	1	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	t0027	2522	1	1	0	0	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	t0028	2522	1	0	0	1	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	t0029	2522	1	0	1	0	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	t0030	2522	1	1	0	0	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	t0031	2522	1	1	0	0	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	t0032	2522	1	0	1	0	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	t0033	2522	1	1	0	0	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	t0034	2522	1	0	1	0	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	t0035	2522	1	0	1	0	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	t0036	2522	1	0	1	0	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNDC1_chr10_133155219_133231412	0/0	t0001	1772	126	40	27	44	7	8	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/1	t0002	1772	119	26	14	61	6	11	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	t0003	1763	21	2	10	4	2	3	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	t0004	1763	19	0	8	4	2	5	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	t0005	1763	8	6	1	0	0	1	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	t0006	1772	5	4	1	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	t0007	1769	4	4	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	t0008	1772	3	3	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	1/0	t0009	1772	3	0	2	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	t0010	1763	3	1	1	1	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	t0011	1772	2	0	2	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	t0012	1769	2	2	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	t0013	1772	1	0	0	0	0	1	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	t0014	1772	1	0	0	0	1	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	t0015	1772	1	1	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	t0016	1772	1	0	0	1	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	t0017	1772	1	0	1	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	t0018	1772	1	0	1	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	t0019	1772	1	0	0	1	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	t0020	1772	1	0	0	0	0	1	copy fasta	KNDC1	chr10	133155219	133231412