JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KNDC1_chr10_133155219_133231412	0/0	t0021	1772	1	1	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	t0022	1772	1	1	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	t0023	1769	1	1	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	t0024	1772	1	0	0	1	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	t0025	1772	1	0	0	1	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	t0026	1772	1	1	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	t0027	1790	1	1	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	t0028	1772	1	1	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	t0029	1760	1	1	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNG1_chr3_186712359_186749410	1/1	t0001	2264	163	10	35	99	5	12	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0002	2264	61	7	10	34	1	9	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0003	2264	56	3	11	30	3	9	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0004	2264	20	4	1	9	0	6	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0005	2264	16	0	7	9	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0006	2264	11	11	0	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0007	2264	9	9	0	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0008	2264	7	7	0	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0009	2264	7	6	1	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0010	2264	6	0	0	0	2	4	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0011	2264	6	4	1	1	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0012	2264	6	0	4	2	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0013	2264	4	0	1	1	1	1	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0014	2264	4	3	1	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0015	2264	4	0	0	4	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0016	2264	4	4	0	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0017	2264	4	0	1	0	2	1	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0018	2264	3	3	0	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0019	2264	3	3	0	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0020	2264	3	0	0	3	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0021	2264	3	0	0	2	0	1	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0022	2264	2	1	1	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0023	2264	2	0	1	0	0	1	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0024	2264	2	2	0	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0025	2264	2	2	0	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0026	2264	2	2	0	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0027	2264	2	2	0	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0028	2264	2	1	1	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0029	2264	1	0	0	1	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0030	2264	1	1	0	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0031	2264	1	1	0	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0032	2264	1	1	0	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0033	2264	1	0	0	1	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0034	2264	1	1	0	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0035	2264	1	1	0	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0036	2264	1	1	0	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0037	2264	1	1	0	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0038	2264	1	0	0	1	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0039	2264	1	0	0	1	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0040	2264	1	1	0	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0041	2264	1	1	0	0	0	0	copy fasta	KNG1	chr3	186712359	186749410