JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KNG1_chr3_186712359_186749410	0/0	t0042	2264	1	1	0	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0043	2264	1	1	0	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	t0044	2264	1	1	0	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNL1_chr15_40589249_40669342	1/1	t0001	2316	199	50	12	111	6	18	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	t0002	2316	70	24	17	17	3	9	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	t0003	2316	66	1	16	34	2	13	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	t0004	2316	13	0	13	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	t0005	2316	7	0	6	0	1	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	t0006	2316	3	3	0	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	t0007	2316	2	1	1	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	t0008	2316	1	0	0	1	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	t0009	2316	1	1	0	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	t0010	2316	1	0	0	1	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	t0011	2316	1	0	0	0	0	1	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	t0012	2370	1	0	0	0	0	1	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	t0013	2316	1	0	1	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	t0014	2316	1	0	0	1	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	t0015	2361	1	1	0	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	t0016	2256	1	0	0	1	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	t0017	2316	1	1	0	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNOP1_chr16_19696937_19723227	0/0	t0001	5046	118	7	22	63	7	19	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0002	5046	50	9	6	24	2	9	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0003	5046	46	0	22	12	7	5	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0004	5043	19	19	0	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0005	5046	16	0	0	13	0	3	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0006	5041	11	9	2	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0007	5046	11	0	5	6	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0008	5046	9	9	0	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0009	5046	7	0	7	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/1	t0010	5046	7	0	5	0	0	1	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0011	5046	6	5	1	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0012	5041	6	6	0	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0013	5041	5	5	0	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0014	5046	3	3	0	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0015	5042	3	1	0	2	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0016	5047	3	0	1	2	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0017	5046	3	0	0	3	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0018	5043	3	1	2	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0019	5043	3	3	0	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0020	5046	3	0	0	3	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0021	5041	2	2	0	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0022	5046	2	0	0	2	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0023	5042	2	2	0	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0024	5047	2	0	0	2	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0025	5046	2	0	2	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0026	5046	2	0	0	2	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0027	5046	2	1	1	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0028	5046	2	0	0	0	0	2	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0029	5046	1	0	0	0	0	1	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0030	5046	1	0	0	1	0	0	copy fasta	KNOP1	chr16	19696937	19723227