JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KNOP1_chr16_19696937_19723227	0/0	t0031	5042	1	1	0	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	1/0	t0032	5046	1	0	0	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0033	5046	1	0	0	1	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0034	5046	1	0	0	0	0	1	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0035	5041	1	1	0	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0036	5046	1	0	0	1	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0037	5042	1	1	0	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0038	5046	1	0	0	0	0	1	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0039	5047	1	0	0	1	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0040	5041	1	1	0	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0041	5041	1	1	0	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0042	5046	1	0	0	1	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0043	5044	1	1	0	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0044	5041	1	1	0	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0045	5047	1	1	0	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0046	5068	1	1	0	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0047	5046	1	0	0	1	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0048	5046	1	0	0	1	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0049	5046	1	1	0	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0050	5041	1	1	0	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0051	5041	1	1	0	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	t0052	5046	1	0	0	1	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNSTRN_chr15_40377721_40399288	1/1	t0001	807	330	59	55	161	13	40	copy fasta	KNSTRN	chr15	40377721	40399288
KNSTRN_chr15_40377721_40399288	0/0	t0002	807	32	18	11	0	1	2	copy fasta	KNSTRN	chr15	40377721	40399288
KNSTRN_chr15_40377721_40399288	0/0	t0003	807	5	5	0	0	0	0	copy fasta	KNSTRN	chr15	40377721	40399288
KNSTRN_chr15_40377721_40399288	0/0	t0004	807	2	2	0	0	0	0	copy fasta	KNSTRN	chr15	40377721	40399288
KNSTRN_chr15_40377721_40399288	0/0	t0005	807	2	1	1	0	0	0	copy fasta	KNSTRN	chr15	40377721	40399288
KNSTRN_chr15_40377721_40399288	0/0	t0006	807	1	0	0	1	0	0	copy fasta	KNSTRN	chr15	40377721	40399288
KNSTRN_chr15_40377721_40399288	0/0	t0007	807	1	1	0	0	0	0	copy fasta	KNSTRN	chr15	40377721	40399288
KNSTRN_chr15_40377721_40399288	0/0	t0008	807	1	0	1	0	0	0	copy fasta	KNSTRN	chr15	40377721	40399288
KNTC1_chr12_122522249_122631396	1/1	t0001	345	316	78	63	120	14	39	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	t0002	345	2	0	2	0	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	t0003	345	2	0	1	0	0	1	copy fasta	KNTC1	chr12	122522249	122631396
KPLCE_chr1_152714522_152725470	1/1	t0001	197	244	43	43	121	5	30	copy fasta	KPLCE	chr1	152714522	152725470
KPLCE_chr1_152714522_152725470	0/0	t0002	197	126	51	26	36	5	8	copy fasta	KPLCE	chr1	152714522	152725470
KPLCE_chr1_152714522_152725470	0/0	t0003	197	14	0	5	3	2	4	copy fasta	KPLCE	chr1	152714522	152725470
KPNA1_chr3_122416902_122519939	0/0	t0001	5272	77	12	21	32	2	10	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0002	5272	72	9	12	42	2	7	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0003	5272	61	6	8	37	4	6	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0004	5271	23	18	1	4	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0005	5270	19	0	8	4	2	5	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0006	5273	14	3	1	7	1	2	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0007	5271	14	0	0	12	0	2	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0008	5272	10	0	5	4	0	1	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0009	5272	9	0	0	9	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0010	5271	8	8	0	0	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0011	5273	7	0	3	2	0	2	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	1/0	t0012	5272	6	5	0	0	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/1	t0013	5273	6	0	0	4	0	1	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0014	5271	6	6	0	0	0	0	copy fasta	KPNA1	chr3	122416902	122519939