JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KPNA1_chr3_122416902_122519939	0/0	t0015	5270	6	6	0	0	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0016	5270	5	0	0	5	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0017	5272	4	4	0	0	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0018	5271	4	2	2	0	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0019	5269	3	0	1	0	0	2	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0020	5272	3	0	0	1	0	2	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0021	5272	3	0	0	3	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0022	5272	2	0	0	0	0	2	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0023	5272	2	0	1	0	1	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0024	5272	2	0	2	0	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0025	5272	2	2	0	0	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0026	5270	2	0	0	2	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0027	5272	2	0	0	2	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0028	5272	1	0	0	1	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0029	5271	1	1	0	0	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0030	5271	1	1	0	0	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0031	5272	1	1	0	0	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0032	5285	1	1	0	0	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0033	5271	1	1	0	0	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0034	5272	1	0	0	1	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0035	5272	1	0	0	1	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0036	5271	1	0	0	1	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0037	5272	1	0	0	0	1	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0038	5271	1	0	0	1	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0039	5273	1	1	0	0	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0040	5273	1	1	0	0	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0041	5272	1	1	0	0	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0042	5272	1	0	0	1	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0043	5271	1	1	0	0	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0044	5271	1	1	0	0	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0045	5273	1	1	0	0	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0046	5271	1	0	0	1	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0047	5273	1	0	0	1	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0048	5271	1	1	0	0	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0049	5273	1	0	0	0	1	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0050	5272	1	0	0	1	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0051	5271	1	0	0	1	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0052	5270	1	0	1	0	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0053	5271	1	0	0	1	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0054	5272	1	0	0	1	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	t0055	5272	1	1	0	0	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA2_chr17_68030735_68051854	1/1	t0001	388	214	82	40	58	12	20	copy fasta	KPNA2	chr17	68030735	68051854
KPNA2_chr17_68030735_68051854	0/0	t0002	388	120	11	16	75	2	16	copy fasta	KPNA2	chr17	68030735	68051854
KPNA2_chr17_68030735_68051854	0/0	t0003	388	3	3	0	0	0	0	copy fasta	KPNA2	chr17	68030735	68051854
KPNA2_chr17_68030735_68051854	0/0	t0004	388	2	0	0	0	0	2	copy fasta	KPNA2	chr17	68030735	68051854
KPNA2_chr17_68030735_68051854	0/0	t0005	388	1	0	0	1	0	0	copy fasta	KPNA2	chr17	68030735	68051854
KPNA3_chr13_49694320_49797682	0/0	t0001	2661	108	28	13	62	0	5	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/1	t0002	2659	67	5	24	28	4	5	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	t0003	2658	45	7	16	13	2	7	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	t0004	2657	45	2	1	32	0	10	copy fasta	KPNA3	chr13	49694320	49797682