Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AP4M1_chr7_100096643_100114039	0/0	t0009	2232	5	5	0	0	0	0	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	t0010	2230	4	0	0	4	0	0	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	t0011	2230	3	3	0	0	0	0	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	t0012	2230	3	0	0	3	0	0	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	t0013	2230	2	0	1	1	0	0	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	t0014	2230	2	0	0	0	0	2	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	t0015	2230	2	2	0	0	0	0	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	t0016	2230	2	2	0	0	0	0	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	t0017	2230	2	2	0	0	0	0	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	t0018	2230	2	0	0	0	0	2	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	t0019	2230	2	0	0	2	0	0	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	t0020	2230	1	0	1	0	0	0	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	t0021	2230	1	0	0	0	0	1	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	t0022	2230	1	0	0	1	0	0	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	t0023	2230	1	0	0	0	0	1	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	t0024	2230	1	1	0	0	0	0	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	t0025	2230	1	0	0	0	0	1	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	t0026	2230	1	1	0	0	0	0	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	t0027	2232	1	1	0	0	0	0	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	t0028	2230	1	1	0	0	0	0	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	t0029	2230	1	1	0	0	0	0	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	t0030	2230	1	0	0	0	0	1	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	t0031	2230	1	0	0	1	0	0	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	t0032	2230	1	0	0	1	0	0	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	t0033	2230	1	0	0	0	1	0	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	t0034	2230	1	0	0	1	0	0	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	t0035	2230	1	1	0	0	0	0	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	t0036	2230	1	0	0	1	0	0	copy fasta	AP4M1	chr7	100096643	100114039
AP4M1_chr7_100096643_100114039	0/0	t0037	2230	1	0	0	0	0	1	copy fasta	AP4M1	chr7	100096643	100114039
AP4S1_chr14_31020649_31101450	1/0	t0001	3626	179	30	24	95	7	22	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0002	3626	30	1	2	24	0	3	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/1	t0003	3628	23	4	12	0	3	3	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0004	3629	15	2	5	3	1	4	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0005	3627	13	4	3	3	0	3	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0006	3627	9	9	0	0	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0007	3628	8	2	1	0	0	5	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0008	3625	5	1	3	1	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0009	3628	5	1	4	0	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0010	3628	5	0	0	5	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0011	3628	4	0	0	4	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0012	3628	3	3	0	0	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0013	3626	3	0	0	3	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0014	3629	3	3	0	0	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0015	3627	3	1	1	0	1	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0016	3627	2	2	0	0	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0017	3626	2	0	0	2	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0018	3626	2	2	0	0	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0019	3627	2	2	0	0	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0020	3628	1	1	0	0	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0021	3627	1	0	0	1	0	0	copy fasta	AP4S1	chr14	31020649	31101450