JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KPNA3_chr13_49694320_49797682	0/0	t0005	2658	32	14	2	11	1	4	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	t0006	2658	28	17	7	0	0	4	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	t0007	2658	11	10	1	0	0	0	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	t0008	2664	6	6	0	0	0	0	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	t0009	2658	4	0	3	0	1	0	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	t0010	2641	4	0	2	0	0	2	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	t0011	2659	3	3	0	0	0	0	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	t0012	2658	3	1	0	2	0	0	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	t0013	2657	2	0	1	0	1	0	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	t0014	2658	2	0	2	0	0	0	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	t0015	2657	1	0	0	0	0	1	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	t0016	2656	1	0	0	0	0	1	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	t0017	2659	1	1	0	0	0	0	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	t0018	2658	1	0	0	1	0	0	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	t0019	2659	1	0	0	0	1	0	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	t0020	2658	1	0	0	0	0	1	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	t0021	2657	1	0	1	0	0	0	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	t0022	2657	1	0	0	0	0	1	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	t0023	2659	1	0	0	0	0	1	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	t0024	2661	1	0	0	1	0	0	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	t0025	2660	1	1	0	0	0	0	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	t0026	2661	1	0	0	0	0	1	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	t0027	2658	1	0	1	0	0	0	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	t0028	2642	1	0	0	0	0	1	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	1/0	t0029	2657	1	0	0	0	0	0	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	t0030	2658	1	1	0	0	0	0	copy fasta	KPNA3	chr13	49694320	49797682
KPNA4_chr3_160490007_160570571	1/1	t0001	7387	117	21	22	55	4	13	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0002	7389	60	9	16	28	1	6	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0003	7388	17	0	6	0	3	8	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0004	7399	8	2	0	2	0	4	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0005	7390	8	7	1	0	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0006	7389	6	0	0	6	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0007	7390	6	4	2	0	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0008	7389	6	6	0	0	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0009	7389	5	5	0	0	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0010	7388	5	5	0	0	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0011	7388	5	5	0	0	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0012	7390	5	4	1	0	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0013	7391	4	0	0	4	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0014	7388	3	3	0	0	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0015	7388	3	1	0	1	0	1	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0016	7387	3	0	0	3	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0017	7389	3	0	0	3	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0018	7388	3	3	0	0	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0019	7388	2	0	2	0	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0020	7390	2	0	1	1	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0021	7387	2	0	1	0	1	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0022	7390	2	2	0	0	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0023	7386	2	1	0	1	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0024	7387	2	2	0	0	0	0	copy fasta	KPNA4	chr3	160490007	160570571