JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KPNA4_chr3_160490007_160570571	0/0	t0025	7388	1	0	1	0	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0026	7388	1	1	0	0	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0027	7388	1	1	0	0	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0028	7388	1	1	0	0	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0029	7388	1	0	0	0	1	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0030	7389	1	0	1	0	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0031	7391	1	1	0	0	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0032	7390	1	0	0	1	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0033	7388	1	0	1	0	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0034	7391	1	1	0	0	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0035	7389	1	1	0	0	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0036	7399	1	0	0	0	1	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0037	7391	1	0	0	1	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0038	7390	1	0	0	1	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0039	7390	1	1	0	0	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0040	7389	1	1	0	0	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0041	7390	1	0	1	0	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0042	7389	1	1	0	0	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0043	7387	1	0	1	0	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0044	7387	1	0	0	1	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0045	7387	1	1	0	0	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0046	7387	1	0	0	1	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0047	7387	1	0	0	1	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0048	7387	1	0	1	0	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0049	7389	1	0	1	0	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0050	7387	1	0	0	0	1	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0051	7392	1	1	0	0	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0052	7391	1	1	0	0	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	t0053	7387	1	0	1	0	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA5_chr6_116676211_116746867	1/0	t0001	9669	99	12	22	47	5	12	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0002	9663	63	0	4	48	4	7	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0003	9671	35	11	3	14	2	5	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0004	9669	17	3	1	12	0	1	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0005	9671	7	6	1	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0006	9671	7	2	0	1	0	4	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0007	9663	7	0	4	0	3	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0008	9668	6	5	1	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0009	9671	6	6	0	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0010	9665	6	5	0	0	0	1	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0011	9670	5	5	0	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0012	9669	4	3	0	0	1	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0013	9669	4	0	0	4	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0014	9671	3	2	1	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/1	t0015	9671	3	0	0	0	1	1	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0016	9669	3	3	0	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0017	9669	3	3	0	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0018	9671	3	0	2	0	0	1	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0019	9663	3	0	0	3	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0020	9671	3	0	0	3	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0021	9666	3	3	0	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867