JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KPNA5_chr6_116676211_116746867	0/0	t0022	9669	2	0	0	2	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0023	9671	2	0	1	0	0	1	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0024	9669	2	2	0	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0025	9672	2	2	0	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0026	9671	2	2	0	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0027	9671	2	2	0	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0028	9669	1	0	1	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0029	9671	1	1	0	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0030	9672	1	1	0	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0031	9672	1	0	0	0	0	1	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0032	9669	1	0	1	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0033	9671	1	0	0	1	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0034	9669	1	0	1	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0035	9669	1	0	0	1	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0036	9669	1	0	0	0	0	1	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0037	9669	1	0	1	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0038	9669	1	1	0	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0039	9669	1	0	0	1	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0040	9669	1	0	1	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0041	9669	1	0	0	0	0	1	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0042	9669	1	0	1	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0043	9668	1	0	1	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0044	9669	1	0	0	0	0	1	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0045	9669	1	1	0	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0046	9669	1	0	0	0	0	1	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0047	9671	1	0	0	0	0	1	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0048	9671	1	0	0	1	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0049	9671	1	0	0	1	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0050	9671	1	0	0	1	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0051	9671	1	1	0	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0052	9669	1	0	0	0	0	1	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0053	9669	1	1	0	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0054	9671	1	0	0	0	0	1	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0055	9672	1	1	0	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0056	9671	1	1	0	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0057	9671	1	1	0	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0058	9669	1	1	0	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0059	9663	1	0	0	1	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0060	9665	1	1	0	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0061	9662	1	0	1	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0062	9663	1	0	0	0	0	1	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0063	9663	1	0	0	1	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0064	9663	1	0	1	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0065	9663	1	0	1	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0066	9663	1	0	0	1	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0067	9663	1	0	0	1	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0068	9671	1	1	0	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	t0069	9667	1	1	0	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA6_chr1_32103056_32181563	1/1	t0001	5745	104	21	21	39	6	15	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0002	5747	49	3	11	30	1	4	copy fasta	KPNA6	chr1	32103056	32181563