JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KPNA6_chr1_32103056_32181563	0/0	t0003	5746	9	3	4	0	0	2	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0004	5746	5	1	0	3	0	1	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0005	5745	4	0	1	0	2	1	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0006	5745	4	4	0	0	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0007	5745	4	3	1	0	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0008	5748	4	1	2	1	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0009	5745	3	3	0	0	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0010	5743	3	2	1	0	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0011	5749	3	0	0	1	0	2	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0012	5748	3	0	1	2	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0013	5745	2	2	0	0	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0014	5745	2	0	2	0	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0015	5743	2	1	1	0	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0016	5747	2	2	0	0	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0017	5747	2	0	0	1	0	1	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0018	5745	2	0	0	2	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0019	5744	2	1	0	1	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0020	5747	2	2	0	0	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0021	5745	1	0	0	1	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0022	5749	1	1	0	0	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0023	5748	1	1	0	0	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0024	5747	1	1	0	0	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0025	5743	1	1	0	0	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0026	5746	1	0	0	1	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0027	5746	1	0	1	0	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0028	5745	1	0	0	0	1	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0029	5746	1	0	0	1	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0030	5746	1	0	0	1	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0031	5745	1	0	0	1	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0032	5743	1	1	0	0	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0033	5751	1	1	0	0	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0034	5743	1	0	1	0	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0035	5742	1	1	0	0	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0036	5747	1	0	0	1	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0037	5746	1	1	0	0	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0038	5746	1	1	0	0	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0039	5745	1	0	0	1	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0040	5745	1	0	0	1	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0041	5746	1	0	0	1	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0042	5749	1	1	0	0	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0043	5748	1	1	0	0	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0044	5747	1	1	0	0	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0045	5746	1	1	0	0	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0046	5750	1	0	0	1	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0047	5750	1	0	0	1	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0048	5745	1	0	0	1	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0049	5744	1	1	0	0	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0050	5748	1	1	0	0	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0051	5748	1	0	1	0	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	t0052	5747	1	0	0	1	0	0	copy fasta	KPNA6	chr1	32103056	32181563