JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KPNA6_chr1_32103056_32181563	0/0	t0053	5745	1	0	0	1	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA7_chr7_99168572_99213115	1/1	t0001	248	330	90	58	128	14	38	copy fasta	KPNA7	chr7	99168572	99213115
KPNA7_chr7_99168572_99213115	0/0	t0002	248	2	0	0	0	0	2	copy fasta	KPNA7	chr7	99168572	99213115
KPNA7_chr7_99168572_99213115	0/0	t0003	248	1	0	1	0	0	0	copy fasta	KPNA7	chr7	99168572	99213115
KPNA7_chr7_99168572_99213115	0/0	t0004	248	1	0	1	0	0	0	copy fasta	KPNA7	chr7	99168572	99213115
KPNB1_chr17_47644919_47690505	0/0	t0001	3427	79	18	14	33	4	10	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/1	t0002	3427	53	9	15	19	4	5	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0003	3428	49	9	9	24	3	4	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0004	3428	35	8	5	15	0	7	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0005	3429	28	1	6	18	0	3	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0006	3429	14	2	3	8	0	1	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0007	3430	13	4	2	6	0	1	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0008	3429	9	1	2	4	0	2	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0009	3430	8	1	4	1	1	1	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0010	3426	8	3	2	0	2	1	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0011	3435	7	0	0	7	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0012	3434	7	1	0	6	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0013	3430	6	3	0	2	0	1	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0014	3436	5	0	1	3	1	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0015	3429	5	1	0	4	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0016	3429	4	2	0	2	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0017	3437	3	0	0	3	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0018	3431	3	3	0	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0019	3430	3	2	0	1	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0020	3428	3	1	0	1	0	1	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0021	3432	2	2	0	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0022	3430	2	0	0	2	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0023	3431	2	2	0	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0024	3430	2	2	0	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0025	3431	2	0	1	0	1	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0026	3427	2	0	0	2	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0027	3427	2	2	0	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0028	3429	2	0	0	2	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0029	3427	1	1	0	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0030	3440	1	0	0	1	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0031	3436	1	0	0	1	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0032	3435	1	0	0	1	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0033	3428	1	0	0	0	0	1	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0034	3428	1	0	0	1	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0035	3428	1	1	0	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0036	3428	1	0	0	1	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0037	3427	1	0	0	1	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0038	3427	1	0	0	1	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0039	3428	1	0	0	1	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0040	3428	1	1	0	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0041	3427	1	0	0	0	0	1	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0042	3428	1	0	0	0	0	1	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0043	3427	1	0	1	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0044	3427	1	1	0	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0045	3428	1	0	1	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505