JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KPNB1_chr17_47644919_47690505	0/0	t0046	3427	1	0	0	1	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0047	3428	1	1	0	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0048	3427	1	1	0	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	1/0	t0049	3428	1	0	0	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0050	3429	1	1	0	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0051	3436	1	0	0	1	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0052	3434	1	0	0	1	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0053	3430	1	0	0	0	0	1	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	t0054	3429	1	0	0	0	0	1	copy fasta	KPNB1	chr17	47644919	47690505
KPRP_chr1_152753025_152767056	1/0	t0001	792	234	47	42	110	6	28	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	t0002	792	123	32	19	59	1	12	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/1	t0003	792	62	13	16	21	5	6	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	t0004	792	6	5	1	0	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	t0005	792	2	0	0	2	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	t0006	792	1	1	0	0	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPTN_chr19_47470150_47489219	0/0	t0001	326	277	69	53	104	16	35	copy fasta	KPTN	chr19	47470150	47489219
KPTN_chr19_47470150_47489219	0/0	t0002	326	97	21	21	45	1	9	copy fasta	KPTN	chr19	47470150	47489219
KPTN_chr19_47470150_47489219	0/0	t0003	326	2	2	0	0	0	0	copy fasta	KPTN	chr19	47470150	47489219
KPTN_chr19_47470150_47489219	0/0	t0004	326	1	0	0	0	1	0	copy fasta	KPTN	chr19	47470150	47489219
KPTN_chr19_47470150_47489219	0/0	t0005	326	1	0	0	1	0	0	copy fasta	KPTN	chr19	47470150	47489219
KRAS_chr12_25200246_25255929	0/1	t0001	4860	126	5	23	75	6	16	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0002	4862	49	8	14	23	0	4	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0003	4862	30	3	7	14	3	3	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0004	4860	19	5	7	0	2	5	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0005	4863	15	13	2	0	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0006	4863	10	0	8	0	0	2	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0007	4864	8	8	0	0	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0008	4857	7	0	0	7	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0009	4860	6	6	0	0	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0010	4860	5	3	2	0	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0011	4860	5	5	0	0	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0012	4863	5	5	0	0	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0013	4862	5	3	2	0	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0014	4862	4	4	0	0	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0015	4863	4	4	0	0	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0016	4863	4	4	0	0	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0017	4861	3	1	2	0	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0018	4860	3	0	0	0	0	3	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0019	4864	2	2	0	0	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0020	4862	2	2	0	0	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0021	4860	2	0	0	0	0	2	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0022	4860	2	0	0	0	0	2	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0023	4860	2	0	0	0	0	2	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	1/0	t0024	4861	2	0	1	0	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0025	4862	2	0	2	0	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0026	4860	2	2	0	0	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0027	4861	2	2	0	0	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0028	4861	2	2	0	0	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0029	4863	1	1	0	0	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0030	4862	1	1	0	0	0	0	copy fasta	KRAS	chr12	25200246	25255929