JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KRAS_chr12_25200246_25255929	0/0	t0031	4860	1	0	0	1	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0032	4864	1	1	0	0	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0033	4860	1	0	0	1	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0034	4861	1	0	0	1	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0035	4860	1	0	1	0	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0036	4860	1	0	0	0	0	1	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0037	4863	1	1	0	0	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0038	4861	1	1	0	0	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0039	4862	1	0	0	1	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0040	4863	1	0	1	0	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0041	4864	1	0	1	0	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0042	4863	1	0	1	0	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0043	4863	1	1	0	0	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0044	4860	1	0	0	0	1	0	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0045	4862	1	0	0	1	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	t0046	4862	1	1	0	0	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRBA1_chr7_149709951_149739575	1/1	t0001	633	394	75	70	189	16	42	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	t0002	633	8	8	0	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	t0003	633	6	6	0	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	t0004	633	2	2	0	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	t0005	633	1	0	0	1	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	t0006	633	1	1	0	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	t0007	633	1	1	0	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	t0008	633	1	1	0	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA2_chr17_8353822_8381704	1/0	t0001	11138	20	2	1	12	2	2	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0002	11128	17	0	4	12	1	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0003	11124	15	0	4	6	0	5	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0004	11145	10	0	1	9	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0005	11126	9	3	6	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0006	11141	7	0	1	4	0	2	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0007	11140	7	0	2	1	0	4	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0008	11139	6	0	2	3	0	1	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0009	11137	6	1	1	2	1	1	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0010	11142	6	0	2	0	0	4	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0011	11131	6	6	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0012	11135	5	0	2	1	2	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0013	11125	5	0	1	4	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0014	11136	4	1	2	0	0	1	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0015	11138	4	0	0	4	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0016	11146	4	3	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0017	11138	4	1	0	3	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0018	11130	4	0	0	3	1	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0019	11149	4	2	2	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0020	11145	4	3	0	0	0	1	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0021	11127	4	4	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0022	11131	4	4	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0023	11124	4	0	2	0	2	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0024	11143	3	0	1	2	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0025	11140	3	0	0	3	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0026	11134	3	0	1	1	0	1	copy fasta	KRBA2	chr17	8353822	8381704