JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KRBA2_chr17_8353822_8381704	0/0	t0077	11142	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0078	11128	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0079	11125	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0080	11144	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0081	11142	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0082	11138	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0083	11141	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0084	11144	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0085	11145	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0086	11139	1	0	0	0	0	1	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0087	11143	1	0	1	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0088	11141	1	0	0	0	0	1	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0089	11131	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0090	11128	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0091	11146	1	0	1	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0092	11140	1	0	1	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0093	11142	1	0	1	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0094	11141	1	0	1	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0095	11132	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0096	11145	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0097	11137	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0098	11127	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0099	11132	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0100	11127	1	0	0	0	0	1	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0101	11145	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0102	11141	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0103	11129	1	0	0	0	1	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0104	11140	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0105	11138	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0106	11127	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0107	11138	1	0	0	0	0	1	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0108	11128	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0109	11146	1	0	0	0	0	1	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0110	11133	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0111	11130	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0112	11130	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0113	11128	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0114	11148	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0115	11125	1	0	0	0	0	1	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0116	11150	1	0	0	0	0	1	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0117	11148	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0118	11138	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0119	11150	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0120	11148	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0121	11146	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0122	11146	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0123	11142	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0124	11140	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0125	11140	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0126	11138	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704