JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KRBA2_chr17_8353822_8381704	0/0	t0127	11136	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0128	11136	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0129	11128	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0130	11146	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0131	11142	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0132	11140	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0133	11138	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0134	11136	1	0	0	0	0	1	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0135	11138	1	0	0	0	0	1	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0136	11143	1	0	1	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0137	11141	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0138	11139	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0139	11147	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0140	11143	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0141	11141	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0142	11130	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0143	11147	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0144	11138	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0145	11129	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0146	11140	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0147	11144	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0148	11141	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0149	11129	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0150	11138	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0151	11128	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0152	11131	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0153	11132	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0154	11150	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0155	11148	1	0	1	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0156	11155	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0157	11153	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0158	11149	1	0	1	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0159	11147	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0160	11146	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0161	11144	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0162	11152	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0163	11150	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0164	11146	1	0	0	0	0	1	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0165	11150	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0166	11144	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0167	11142	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0168	11148	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0169	11142	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0170	11149	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0171	11147	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0172	11143	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0173	11139	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0174	11139	1	0	0	0	1	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0175	11121	1	0	1	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0176	11119	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704