Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AP4S1_chr14_31020649_31101450	0/0	t0022	3626	1	0	0	1	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0023	3626	1	0	0	1	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0024	3626	1	0	0	1	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0025	3627	1	0	0	1	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0026	3628	1	1	0	0	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0027	3627	1	1	0	0	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0028	3628	1	1	0	0	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0029	3627	1	1	0	0	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0030	3626	1	0	0	0	0	1	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0031	3626	1	1	0	0	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0032	3628	1	1	0	0	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0033	3626	1	0	0	1	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0034	3626	1	1	0	0	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0035	3625	1	0	0	1	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0036	3626	1	1	0	0	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0037	3625	1	1	0	0	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0038	3626	1	0	0	1	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0039	3628	1	1	0	0	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0040	3626	1	0	0	1	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0041	3627	1	1	0	0	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0042	3627	1	1	0	0	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0043	3627	1	1	0	0	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0044	3628	1	0	1	0	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0045	3628	1	0	0	1	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0046	3627	1	0	0	1	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0047	3627	1	1	0	0	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0048	3629	1	0	0	1	0	0	copy fasta	AP4S1	chr14	31020649	31101450
AP4S1_chr14_31020649_31101450	0/0	t0049	3628	1	0	0	0	0	1	copy fasta	AP4S1	chr14	31020649	31101450
AP5B1_chr11_65768898_65785976	0/0	t0001	4344	122	4	21	77	7	13	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0002	4344	103	19	20	53	5	6	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/1	t0003	4344	48	12	10	23	1	1	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0004	4344	42	1	8	17	4	12	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0005	4344	8	7	1	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0006	4344	8	8	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0007	4344	7	6	1	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0008	4344	7	6	1	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0009	4344	7	0	5	0	1	1	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0010	4344	6	0	0	6	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0011	4344	6	0	4	2	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0012	4344	6	6	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	1/0	t0013	4344	5	4	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0014	4344	4	0	0	4	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0015	4344	4	0	0	4	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0016	4344	3	0	0	3	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0017	4344	2	2	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0018	4344	2	0	0	2	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0019	4344	2	0	0	2	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0020	4344	2	0	0	2	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0021	4344	2	2	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976
AP5B1_chr11_65768898_65785976	0/0	t0022	4344	2	2	0	0	0	0	copy fasta	AP5B1	chr11	65768898	65785976