JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KRBA2_chr17_8353822_8381704	0/0	t0177	11153	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0178	11146	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0179	11147	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0180	11145	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0181	11154	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0182	11154	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0183	11154	1	0	1	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0184	11146	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0185	11150	1	0	1	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0186	11146	1	0	1	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0187	11153	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0188	11122	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0189	11127	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0190	11126	1	0	0	0	1	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0191	11154	1	0	1	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0192	11128	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0193	11126	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0194	11127	1	0	1	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0195	11126	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0196	11132	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0197	11126	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0198	11124	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0199	11118	1	0	1	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0200	11125	1	0	1	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0201	11125	1	0	1	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0202	11126	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0203	11137	1	0	0	0	1	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0204	11135	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0205	11143	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0206	11137	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0207	11139	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0208	11144	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0209	11127	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0210	11142	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0211	11144	1	0	1	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0212	11128	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0213	11131	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0214	11127	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	t0215	11126	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBOX1_chr3_42931386_42947792	1/1	t0001	262	418	88	74	194	14	46	copy fasta	KRBOX1	chr3	42931386	42947792
KRBOX1_chr3_42931386_42947792	0/0	t0002	262	3	0	0	3	0	0	copy fasta	KRBOX1	chr3	42931386	42947792
KRBOX1_chr3_42931386_42947792	0/0	t0003	262	2	0	0	2	0	0	copy fasta	KRBOX1	chr3	42931386	42947792
KRBOX1_chr3_42931386_42947792	0/0	t0004	262	2	2	0	0	0	0	copy fasta	KRBOX1	chr3	42931386	42947792
KRBOX1_chr3_42931386_42947792	0/0	t0005	262	1	0	0	1	0	0	copy fasta	KRBOX1	chr3	42931386	42947792
KRBOX4_chrX_46442297_46479639	0/1	t0001	1817	222	44	37	116	9	15	copy fasta	KRBOX4	chrX	46442297	46479639
KRBOX4_chrX_46442297_46479639	0/0	t0002	1820	44	3	14	13	4	10	copy fasta	KRBOX4	chrX	46442297	46479639
KRBOX4_chrX_46442297_46479639	0/0	t0003	1817	8	0	0	8	0	0	copy fasta	KRBOX4	chrX	46442297	46479639
KRBOX4_chrX_46442297_46479639	0/0	t0004	1816	7	1	1	5	0	0	copy fasta	KRBOX4	chrX	46442297	46479639
KRBOX4_chrX_46442297_46479639	0/0	t0005	1818	6	0	0	4	0	2	copy fasta	KRBOX4	chrX	46442297	46479639
KRBOX4_chrX_46442297_46479639	0/0	t0006	1819	5	3	1	1	0	0	copy fasta	KRBOX4	chrX	46442297	46479639