JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KRBOX4_chrX_46442297_46479639	1/0	t0007	1819	5	4	0	0	0	0	copy fasta	KRBOX4	chrX	46442297	46479639
KRBOX4_chrX_46442297_46479639	0/0	t0008	1818	4	4	0	0	0	0	copy fasta	KRBOX4	chrX	46442297	46479639
KRBOX4_chrX_46442297_46479639	0/0	t0009	1817	3	3	0	0	0	0	copy fasta	KRBOX4	chrX	46442297	46479639
KRBOX4_chrX_46442297_46479639	0/0	t0010	1818	3	3	0	0	0	0	copy fasta	KRBOX4	chrX	46442297	46479639
KRBOX4_chrX_46442297_46479639	0/0	t0011	1818	3	3	0	0	0	0	copy fasta	KRBOX4	chrX	46442297	46479639
KRBOX4_chrX_46442297_46479639	0/0	t0012	1821	2	0	0	1	0	1	copy fasta	KRBOX4	chrX	46442297	46479639
KRBOX4_chrX_46442297_46479639	0/0	t0013	1819	1	0	0	1	0	0	copy fasta	KRBOX4	chrX	46442297	46479639
KRBOX4_chrX_46442297_46479639	0/0	t0014	1824	1	0	0	1	0	0	copy fasta	KRBOX4	chrX	46442297	46479639
KRBOX4_chrX_46442297_46479639	0/0	t0015	1820	1	0	1	0	0	0	copy fasta	KRBOX4	chrX	46442297	46479639
KRBOX4_chrX_46442297_46479639	0/0	t0016	1817	1	0	1	0	0	0	copy fasta	KRBOX4	chrX	46442297	46479639
KRBOX4_chrX_46442297_46479639	0/0	t0017	1819	1	1	0	0	0	0	copy fasta	KRBOX4	chrX	46442297	46479639
KRBOX4_chrX_46442297_46479639	0/0	t0018	1817	1	1	0	0	0	0	copy fasta	KRBOX4	chrX	46442297	46479639
KRBOX5_chr16_31708244_31766565	0/1	t0001	2379	139	40	27	51	5	15	copy fasta	KRBOX5	chr16	31708244	31766565
KRBOX5_chr16_31708244_31766565	1/0	t0002	2379	103	5	18	68	3	8	copy fasta	KRBOX5	chr16	31708244	31766565
KRBOX5_chr16_31708244_31766565	0/0	t0003	2379	64	4	4	44	0	12	copy fasta	KRBOX5	chr16	31708244	31766565
KRBOX5_chr16_31708244_31766565	0/0	t0004	2380	31	12	0	16	0	3	copy fasta	KRBOX5	chr16	31708244	31766565
KRBOX5_chr16_31708244_31766565	0/0	t0005	2379	17	13	2	0	2	0	copy fasta	KRBOX5	chr16	31708244	31766565
KRBOX5_chr16_31708244_31766565	0/0	t0006	2379	9	8	1	0	0	0	copy fasta	KRBOX5	chr16	31708244	31766565
KRBOX5_chr16_31708244_31766565	0/0	t0007	2379	3	3	0	0	0	0	copy fasta	KRBOX5	chr16	31708244	31766565
KRBOX5_chr16_31708244_31766565	0/0	t0008	2379	2	0	0	2	0	0	copy fasta	KRBOX5	chr16	31708244	31766565
KRBOX5_chr16_31708244_31766565	0/0	t0009	2379	1	0	0	0	0	1	copy fasta	KRBOX5	chr16	31708244	31766565
KRBOX5_chr16_31708244_31766565	0/0	t0010	2379	1	0	0	1	0	0	copy fasta	KRBOX5	chr16	31708244	31766565
KRBOX5_chr16_31708244_31766565	0/0	t0011	2379	1	1	0	0	0	0	copy fasta	KRBOX5	chr16	31708244	31766565
KRBOX5_chr16_31708244_31766565	0/0	t0012	2379	1	0	0	1	0	0	copy fasta	KRBOX5	chr16	31708244	31766565
KRBOX5_chr16_31708244_31766565	0/0	t0013	2379	1	0	0	0	0	1	copy fasta	KRBOX5	chr16	31708244	31766565
KRBOX5_chr16_31708244_31766565	0/0	t0014	2379	1	0	0	1	0	0	copy fasta	KRBOX5	chr16	31708244	31766565
KRCC1_chr2_88022205_88060783	1/1	t0001	1028	278	82	54	107	6	27	copy fasta	KRCC1	chr2	88022205	88060783
KRCC1_chr2_88022205_88060783	0/0	t0002	1028	59	0	18	30	4	7	copy fasta	KRCC1	chr2	88022205	88060783
KRCC1_chr2_88022205_88060783	0/0	t0003	1028	1	0	0	1	0	0	copy fasta	KRCC1	chr2	88022205	88060783
KRCC1_chr2_88022205_88060783	0/0	t0004	1028	1	0	1	0	0	0	copy fasta	KRCC1	chr2	88022205	88060783
KRCC1_chr2_88022205_88060783	0/0	t0005	1028	1	0	1	0	0	0	copy fasta	KRCC1	chr2	88022205	88060783
KREMEN1_chr22_29068035_29151820	0/0	t0001	4805	51	2	11	29	1	8	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	t0002	4805	43	0	5	35	0	3	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	t0003	4804	29	0	0	23	0	6	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	t0004	4805	24	6	7	7	3	1	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	t0005	4804	18	4	0	13	0	1	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	t0006	4804	16	15	1	0	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	t0007	4804	10	0	3	2	1	4	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	t0008	4804	10	8	2	0	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	t0009	4805	9	0	5	4	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	t0010	4803	8	2	0	3	0	3	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	t0011	4805	8	0	0	8	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	t0012	4804	7	0	3	4	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	t0013	4804	7	0	0	7	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	t0014	4805	6	6	0	0	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/1	t0015	4805	6	0	1	0	2	2	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	1/0	t0016	4805	6	0	1	0	2	2	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	t0017	4803	5	0	5	0	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	t0018	4805	5	0	0	5	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	t0019	4805	4	4	0	0	0	0	copy fasta	KREMEN1	chr22	29068035	29151820