JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KREMEN1_chr22_29068035_29151820	0/0	t0070	4804	1	0	0	1	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	t0071	4804	1	0	0	1	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	t0072	4819	1	0	0	1	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	t0073	4804	1	0	0	1	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	t0074	4805	1	0	0	1	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	t0075	4805	1	0	0	1	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	t0076	4805	1	0	0	1	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	t0077	4805	1	0	1	0	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	t0078	4806	1	1	0	0	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	t0079	4805	1	1	0	0	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN2_chr16_2959275_2973380	1/1	t0001	607	382	53	67	203	18	39	copy fasta	KREMEN2	chr16	2959275	2973380
KREMEN2_chr16_2959275_2973380	0/0	t0002	607	42	37	5	0	0	0	copy fasta	KREMEN2	chr16	2959275	2973380
KREMEN2_chr16_2959275_2973380	0/0	t0003	607	5	5	0	0	0	0	copy fasta	KREMEN2	chr16	2959275	2973380
KREMEN2_chr16_2959275_2973380	0/0	t0004	607	2	0	2	0	0	0	copy fasta	KREMEN2	chr16	2959275	2973380
KREMEN2_chr16_2959275_2973380	0/0	t0005	607	1	1	0	0	0	0	copy fasta	KREMEN2	chr16	2959275	2973380
KREMEN2_chr16_2959275_2973380	0/0	t0006	607	1	0	0	1	0	0	copy fasta	KREMEN2	chr16	2959275	2973380
KREMEN2_chr16_2959275_2973380	0/0	t0007	607	1	0	0	0	0	1	copy fasta	KREMEN2	chr16	2959275	2973380
KRI1_chr19_10548085_10571010	0/0	t0001	882	111	10	12	89	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	t0002	882	109	15	23	42	8	21	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/1	t0003	878	70	37	8	8	4	12	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	t0004	881	55	5	16	24	1	9	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	1/0	t0005	878	20	8	6	0	1	4	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	t0006	879	8	0	0	8	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	t0007	883	7	0	4	0	3	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	t0008	878	7	6	1	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	t0009	883	5	3	0	2	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	t0010	881	5	0	1	1	1	2	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	t0011	882	2	0	0	2	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	t0012	882	1	0	0	1	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	t0013	882	1	0	0	1	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	t0014	881	1	0	1	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	t0015	881	1	1	0	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	t0016	883	1	0	0	1	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	t0017	882	1	0	0	1	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	t0018	883	1	1	0	0	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRIT1_chr7_92194413_92250914	1/1	t0001	1869	250	40	43	138	4	23	copy fasta	KRIT1	chr7	92194413	92250914
KRIT1_chr7_92194413_92250914	0/0	t0002	1870	81	22	18	29	4	8	copy fasta	KRIT1	chr7	92194413	92250914
KRIT1_chr7_92194413_92250914	0/0	t0003	1868	13	12	0	1	0	0	copy fasta	KRIT1	chr7	92194413	92250914
KRIT1_chr7_92194413_92250914	0/0	t0004	1869	8	7	1	0	0	0	copy fasta	KRIT1	chr7	92194413	92250914
KRIT1_chr7_92194413_92250914	0/0	t0005	1869	2	2	0	0	0	0	copy fasta	KRIT1	chr7	92194413	92250914
KRIT1_chr7_92194413_92250914	0/0	t0006	1870	1	0	1	0	0	0	copy fasta	KRIT1	chr7	92194413	92250914
KRIT1_chr7_92194413_92250914	0/0	t0007	1869	1	0	0	0	0	1	copy fasta	KRIT1	chr7	92194413	92250914
KRIT1_chr7_92194413_92250914	0/0	t0008	1869	1	0	0	1	0	0	copy fasta	KRIT1	chr7	92194413	92250914
KRIT1_chr7_92194413_92250914	0/0	t0009	1869	1	0	0	1	0	0	copy fasta	KRIT1	chr7	92194413	92250914
KRIT1_chr7_92194413_92250914	0/0	t0010	1869	1	0	1	0	0	0	copy fasta	KRIT1	chr7	92194413	92250914
KRIT1_chr7_92194413_92250914	0/0	t0011	1869	1	1	0	0	0	0	copy fasta	KRIT1	chr7	92194413	92250914
KRR1_chr12_75485863_75516609	0/1	t0001	8961	75	9	14	39	3	9	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0002	8959	49	8	15	17	3	6	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0003	8957	39	3	10	16	2	8	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0004	8958	19	1	2	16	0	0	copy fasta	KRR1	chr12	75485863	75516609