JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KRR1_chr12_75485863_75516609	0/0	t0005	8958	17	7	2	5	0	3	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	1/0	t0006	8959	16	6	4	1	2	2	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0007	8960	14	0	3	11	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0008	8959	7	4	1	0	1	1	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0009	8960	7	2	5	0	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0010	8960	7	6	1	0	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0011	8964	7	7	0	0	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0012	8959	6	0	0	6	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0013	8959	5	5	0	0	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0014	8959	5	1	0	3	0	1	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0015	8962	5	0	0	5	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0016	8958	4	0	0	4	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0017	8961	4	1	2	0	1	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0018	8958	3	0	0	3	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0019	8960	3	0	1	2	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0020	8959	3	0	0	3	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0021	8960	3	1	0	2	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0022	8961	2	2	0	0	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0023	8957	2	2	0	0	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0024	8958	2	0	0	2	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0025	8956	2	1	1	0	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0026	8958	2	2	0	0	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0027	8959	2	2	0	0	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0028	8956	2	2	0	0	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0029	8961	2	0	0	0	0	2	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0030	8961	2	0	0	2	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0031	8961	2	0	0	2	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0032	8958	1	0	0	0	0	1	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0033	8957	1	0	1	0	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0034	8959	1	1	0	0	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0035	8958	1	1	0	0	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0036	8958	1	0	0	1	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0037	8958	1	0	0	1	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0038	8956	1	0	0	0	0	1	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0039	8957	1	0	0	1	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0040	8957	1	0	0	1	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0041	8957	1	0	0	1	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0042	8958	1	1	0	0	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0043	8958	1	0	0	1	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0044	8957	1	0	0	1	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0045	8960	1	0	0	0	1	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0046	8962	1	1	0	0	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0047	8960	1	0	0	0	0	1	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0048	8962	1	0	0	1	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0049	9282	1	1	0	0	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0050	9281	1	1	0	0	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0051	8958	1	0	0	1	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0052	8958	1	0	0	1	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0053	8959	1	0	0	1	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0054	8959	1	0	0	1	0	0	copy fasta	KRR1	chr12	75485863	75516609