JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KRR1_chr12_75485863_75516609	0/0	t0055	8959	1	0	0	1	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0056	8959	1	1	0	0	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0057	8959	1	0	0	0	0	1	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0058	8959	1	1	0	0	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0059	8959	1	1	0	0	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0060	8959	1	0	0	1	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0061	8959	1	0	0	1	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0062	8959	1	0	0	0	1	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0063	8959	1	0	0	0	0	1	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0064	8960	1	1	0	0	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0065	8965	1	1	0	0	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0066	8961	1	0	0	1	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0067	8961	1	0	0	1	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0068	8961	1	0	0	1	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0069	8961	1	0	0	1	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0070	8961	1	0	0	1	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0071	8961	1	0	0	1	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0072	8961	1	0	0	0	0	1	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0073	8960	1	0	1	0	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0074	8961	1	0	0	1	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0075	8961	1	0	0	1	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0076	8959	1	0	1	0	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0077	8965	1	1	0	0	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0078	8964	1	1	0	0	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0079	8958	1	0	0	1	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0080	8873	1	0	0	1	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRR1_chr12_75485863_75516609	0/0	t0081	8961	1	1	0	0	0	0	copy fasta	KRR1	chr12	75485863	75516609
KRT10_chr17_40813117_40827614	1/1	t0001	389	387	68	66	201	11	39	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	t0002	389	21	4	10	1	1	5	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	t0003	389	8	8	0	0	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	t0004	389	5	5	0	0	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	t0005	389	2	0	0	0	2	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	t0006	389	2	2	0	0	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT10_chr17_40813117_40827614	0/0	t0007	389	1	1	0	0	0	0	copy fasta	KRT10	chr17	40813117	40827614
KRT12_chr17_40856303_40872223	0/1	t0001	396	422	92	82	185	16	46	copy fasta	KRT12	chr17	40856303	40872223
KRT12_chr17_40856303_40872223	0/0	t0002	396	2	0	0	2	0	0	copy fasta	KRT12	chr17	40856303	40872223
KRT12_chr17_40856303_40872223	0/0	t0003	396	1	0	0	1	0	0	copy fasta	KRT12	chr17	40856303	40872223
KRT13_chr17_41495981_41510612	0/0	t0001	338	265	72	51	102	13	27	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	1/1	t0002	338	172	11	34	102	3	20	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	t0003	338	32	15	2	14	0	1	copy fasta	KRT13	chr17	41495981	41510612
KRT13_chr17_41495981_41510612	0/0	t0004	338	1	0	1	0	0	0	copy fasta	KRT13	chr17	41495981	41510612
KRT14_chr17_41577279_41591895	1/1	t0001	218	326	91	73	108	16	36	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	t0002	218	3	3	0	0	0	0	copy fasta	KRT14	chr17	41577279	41591895
KRT14_chr17_41577279_41591895	0/0	t0003	218	1	0	1	0	0	0	copy fasta	KRT14	chr17	41577279	41591895
KRT15_chr17_41508745_41523890	1/1	t0001	342	378	97	74	155	15	35	copy fasta	KRT15	chr17	41508745	41523890
KRT15_chr17_41508745_41523890	0/0	t0002	342	17	1	8	0	1	7	copy fasta	KRT15	chr17	41508745	41523890
KRT15_chr17_41508745_41523890	0/0	t0003	342	3	0	0	3	0	0	copy fasta	KRT15	chr17	41508745	41523890
KRT16_chr17_41604778_41617767	1/1	t0001	237	396	91	85	162	14	42	copy fasta	KRT16	chr17	41604778	41617767
KRT16_chr17_41604778_41617767	0/0	t0002	237	1	1	0	0	0	0	copy fasta	KRT16	chr17	41604778	41617767
KRT16_chr17_41604778_41617767	0/0	t0003	237	1	0	1	0	0	0	copy fasta	KRT16	chr17	41604778	41617767