JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KRT17_chr17_41614442_41629575	1/1	t0001	219	304	46	66	137	16	37	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	t0002	219	34	26	4	0	0	4	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	t0003	219	25	0	0	25	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	t0004	219	10	1	8	0	1	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	t0005	219	9	6	1	0	0	2	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	t0006	219	7	5	2	0	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	t0007	219	6	6	0	0	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	t0008	219	3	3	0	0	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	t0009	219	1	0	0	0	1	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	t0010	219	1	1	0	0	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	t0011	219	1	0	0	1	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	t0012	219	1	0	0	1	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	t0013	219	1	0	1	0	0	0	copy fasta	KRT17	chr17	41614442	41629575
KRT17_chr17_41614442_41629575	0/0	t0014	219	1	0	0	0	0	1	copy fasta	KRT17	chr17	41614442	41629575
KRT18_chr12_52944118_52957906	0/0	t0001	121	401	93	72	178	18	40	copy fasta	KRT18	chr12	52944118	52957906
KRT18_chr12_52944118_52957906	0/0	t0002	121	2	0	2	0	0	0	copy fasta	KRT18	chr12	52944118	52957906
KRT18_chr12_52944118_52957906	0/0	t0003	121	1	1	0	0	0	0	copy fasta	KRT18	chr12	52944118	52957906
KRT18_chr12_52944118_52957906	0/0	t0004	121	1	1	0	0	0	0	copy fasta	KRT18	chr12	52944118	52957906
KRT18_chr12_52944118_52957906	0/0	t0005	121	1	1	0	0	0	0	copy fasta	KRT18	chr12	52944118	52957906
KRT19_chr17_41518617_41533308	1/1	t0001	188	367	97	78	142	18	30	copy fasta	KRT19	chr17	41518617	41533308
KRT19_chr17_41518617_41533308	0/0	t0002	188	1	1	0	0	0	0	copy fasta	KRT19	chr17	41518617	41533308
KRT1_chr12_52669736_52685407	1/0	t0001	517	384	93	67	167	13	43	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/1	t0002	517	8	0	5	0	1	1	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	t0003	517	1	1	0	0	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	t0004	517	1	0	0	1	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	t0005	517	1	0	0	0	0	1	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	t0006	517	1	1	0	0	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	t0007	517	1	0	0	0	0	1	copy fasta	KRT1	chr12	52669736	52685407
KRT1_chr12_52669736_52685407	0/0	t0008	517	1	1	0	0	0	0	copy fasta	KRT1	chr12	52669736	52685407
KRT20_chr17_40870889_40890242	0/1	t0001	530	279	50	57	135	12	24	copy fasta	KRT20	chr17	40870889	40890242
KRT20_chr17_40870889_40890242	0/0	t0002	530	142	41	8	70	1	22	copy fasta	KRT20	chr17	40870889	40890242
KRT20_chr17_40870889_40890242	0/0	t0003	530	24	2	16	5	1	0	copy fasta	KRT20	chr17	40870889	40890242
KRT20_chr17_40870889_40890242	0/0	t0004	530	2	2	0	0	0	0	copy fasta	KRT20	chr17	40870889	40890242
KRT20_chr17_40870889_40890242	0/0	t0005	530	1	1	0	0	0	0	copy fasta	KRT20	chr17	40870889	40890242
KRT20_chr17_40870889_40890242	0/0	t0006	530	1	0	0	1	0	0	copy fasta	KRT20	chr17	40870889	40890242
KRT20_chr17_40870889_40890242	0/0	t0007	530	1	0	0	1	0	0	copy fasta	KRT20	chr17	40870889	40890242
KRT20_chr17_40870889_40890242	0/0	t0008	530	1	0	1	0	0	0	copy fasta	KRT20	chr17	40870889	40890242
KRT222_chr17_40649665_40670177	0/0	t0001	1820	165	48	17	78	7	15	copy fasta	KRT222	chr17	40649665	40670177
KRT222_chr17_40649665_40670177	1/1	t0002	1816	112	11	23	57	7	12	copy fasta	KRT222	chr17	40649665	40670177
KRT222_chr17_40649665_40670177	0/0	t0003	1822	95	7	12	68	0	8	copy fasta	KRT222	chr17	40649665	40670177
KRT222_chr17_40649665_40670177	0/0	t0004	1820	8	7	1	0	0	0	copy fasta	KRT222	chr17	40649665	40670177
KRT222_chr17_40649665_40670177	0/0	t0005	1824	8	0	7	0	0	1	copy fasta	KRT222	chr17	40649665	40670177
KRT222_chr17_40649665_40670177	0/0	t0006	1820	8	8	0	0	0	0	copy fasta	KRT222	chr17	40649665	40670177
KRT222_chr17_40649665_40670177	0/0	t0007	1816	5	2	3	0	0	0	copy fasta	KRT222	chr17	40649665	40670177
KRT222_chr17_40649665_40670177	0/0	t0008	1820	3	0	0	0	0	3	copy fasta	KRT222	chr17	40649665	40670177
KRT222_chr17_40649665_40670177	0/0	t0009	1824	2	2	0	0	0	0	copy fasta	KRT222	chr17	40649665	40670177
KRT222_chr17_40649665_40670177	0/0	t0010	1822	2	1	1	0	0	0	copy fasta	KRT222	chr17	40649665	40670177
KRT222_chr17_40649665_40670177	0/0	t0011	1820	2	0	1	0	0	1	copy fasta	KRT222	chr17	40649665	40670177
KRT222_chr17_40649665_40670177	0/0	t0012	1822	1	1	0	0	0	0	copy fasta	KRT222	chr17	40649665	40670177
KRT222_chr17_40649665_40670177	0/0	t0013	1822	1	0	0	1	0	0	copy fasta	KRT222	chr17	40649665	40670177