JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KRT222_chr17_40649665_40670177	0/0	t0014	1818	1	0	0	0	0	1	copy fasta	KRT222	chr17	40649665	40670177
KRT222_chr17_40649665_40670177	0/0	t0015	1820	1	0	0	1	0	0	copy fasta	KRT222	chr17	40649665	40670177
KRT222_chr17_40649665_40670177	0/0	t0016	1820	1	0	1	0	0	0	copy fasta	KRT222	chr17	40649665	40670177
KRT222_chr17_40649665_40670177	0/0	t0017	1820	1	1	0	0	0	0	copy fasta	KRT222	chr17	40649665	40670177
KRT222_chr17_40649665_40670177	0/0	t0018	1822	1	0	0	0	0	1	copy fasta	KRT222	chr17	40649665	40670177
KRT222_chr17_40649665_40670177	0/0	t0019	1816	1	0	0	1	0	0	copy fasta	KRT222	chr17	40649665	40670177
KRT23_chr17_40917700_40942646	0/1	t0001	941	209	40	36	102	9	21	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	t0002	941	128	5	30	76	4	13	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	t0003	941	36	14	9	10	0	3	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	t0004	941	23	12	4	2	1	4	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	t0005	941	16	11	0	3	0	2	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	t0006	941	4	3	1	0	0	0	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	t0007	941	4	4	0	0	0	0	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	t0008	941	3	3	0	0	0	0	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	t0009	941	3	0	3	0	0	0	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	t0010	941	3	1	0	2	0	0	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	t0011	941	2	2	0	0	0	0	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	t0012	941	1	1	0	0	0	0	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	t0013	941	1	0	0	0	0	1	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	t0014	941	1	0	0	1	0	0	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	t0015	941	1	0	1	0	0	0	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	t0016	941	1	1	0	0	0	0	copy fasta	KRT23	chr17	40917700	40942646
KRT23_chr17_40917700_40942646	0/0	t0017	941	1	1	0	0	0	0	copy fasta	KRT23	chr17	40917700	40942646
KRT24_chr17_40692991_40708752	1/0	t0001	306	308	75	44	150	8	30	copy fasta	KRT24	chr17	40692991	40708752
KRT24_chr17_40692991_40708752	0/1	t0002	306	112	12	19	64	8	8	copy fasta	KRT24	chr17	40692991	40708752
KRT24_chr17_40692991_40708752	0/0	t0003	306	4	3	1	0	0	0	copy fasta	KRT24	chr17	40692991	40708752
KRT25_chr17_40743021_40760331	1/1	t0001	317	372	90	65	153	16	46	copy fasta	KRT25	chr17	40743021	40760331
KRT25_chr17_40743021_40760331	0/0	t0002	317	52	2	9	41	0	0	copy fasta	KRT25	chr17	40743021	40760331
KRT25_chr17_40743021_40760331	0/0	t0003	317	1	0	0	1	0	0	copy fasta	KRT25	chr17	40743021	40760331
KRT25_chr17_40743021_40760331	0/0	t0004	317	1	0	0	1	0	0	copy fasta	KRT25	chr17	40743021	40760331
KRT26_chr17_40761238_40777201	1/0	t0001	366	253	75	47	88	9	33	copy fasta	KRT26	chr17	40761238	40777201
KRT26_chr17_40761238_40777201	0/1	t0002	364	148	13	28	90	7	9	copy fasta	KRT26	chr17	40761238	40777201
KRT26_chr17_40761238_40777201	0/0	t0003	366	6	6	0	0	0	0	copy fasta	KRT26	chr17	40761238	40777201
KRT26_chr17_40761238_40777201	0/0	t0004	366	4	0	1	0	1	2	copy fasta	KRT26	chr17	40761238	40777201
KRT26_chr17_40761238_40777201	0/0	t0005	366	2	0	2	0	0	0	copy fasta	KRT26	chr17	40761238	40777201
KRT26_chr17_40761238_40777201	0/0	t0006	366	1	0	0	0	1	0	copy fasta	KRT26	chr17	40761238	40777201
KRT27_chr17_40771808_40787550	1/1	t0001	249	460	94	84	214	18	48	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	t0002	249	3	3	0	0	0	0	copy fasta	KRT27	chr17	40771808	40787550
KRT27_chr17_40771808_40787550	0/0	t0003	249	1	1	0	0	0	0	copy fasta	KRT27	chr17	40771808	40787550
KRT28_chr17_40787196_40804959	1/1	t0001	298	451	81	84	224	18	42	copy fasta	KRT28	chr17	40787196	40804959
KRT28_chr17_40787196_40804959	0/0	t0002	298	15	15	0	0	0	0	copy fasta	KRT28	chr17	40787196	40804959
KRT2_chr12_52639558_52657211	1/1	t0001	531	409	88	83	176	16	44	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	t0002	531	29	1	3	25	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	t0003	531	12	0	0	12	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	t0004	527	4	4	0	0	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	t0005	527	4	4	0	0	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	t0006	531	2	2	0	0	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	t0007	531	2	0	0	0	0	2	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	t0008	527	1	1	0	0	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	t0009	531	1	0	0	1	0	0	copy fasta	KRT2	chr12	52639558	52657211