JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KRT2_chr12_52639558_52657211	0/0	t0010	531	1	0	0	1	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT2_chr12_52639558_52657211	0/0	t0011	531	1	0	0	1	0	0	copy fasta	KRT2	chr12	52639558	52657211
KRT31_chr17_41388721_41402608	0/1	t0001	365	244	45	49	114	12	23	copy fasta	KRT31	chr17	41388721	41402608
KRT31_chr17_41388721_41402608	0/0	t0002	365	107	20	14	57	2	14	copy fasta	KRT31	chr17	41388721	41402608
KRT31_chr17_41388721_41402608	0/0	t0003	365	52	0	15	31	1	5	copy fasta	KRT31	chr17	41388721	41402608
KRT31_chr17_41388721_41402608	0/0	t0004	365	27	26	1	0	0	0	copy fasta	KRT31	chr17	41388721	41402608
KRT31_chr17_41388721_41402608	0/0	t0005	365	17	0	3	9	3	2	copy fasta	KRT31	chr17	41388721	41402608
KRT31_chr17_41388721_41402608	0/0	t0006	365	2	2	0	0	0	0	copy fasta	KRT31	chr17	41388721	41402608
KRT31_chr17_41388721_41402608	0/0	t0007	365	1	0	0	1	0	0	copy fasta	KRT31	chr17	41388721	41402608
KRT31_chr17_41388721_41402608	0/0	t0008	365	1	1	0	0	0	0	copy fasta	KRT31	chr17	41388721	41402608
KRT31_chr17_41388721_41402608	0/0	t0009	365	1	0	0	1	0	0	copy fasta	KRT31	chr17	41388721	41402608
KRT31_chr17_41388721_41402608	0/0	t0010	365	1	0	0	1	0	0	copy fasta	KRT31	chr17	41388721	41402608
KRT32_chr17_41454513_41472386	0/0	t0001	658	165	22	32	90	9	12	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	1/0	t0002	659	142	48	18	57	2	16	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/1	t0003	659	70	15	18	22	5	9	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	t0004	658	60	1	13	43	0	3	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	t0005	659	8	0	1	0	1	6	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	t0006	659	5	5	0	0	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	t0007	659	2	2	0	0	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	t0008	659	2	2	0	0	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	t0009	658	1	0	0	1	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	t0010	658	1	0	0	1	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	t0011	659	1	1	0	0	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	t0012	675	1	1	0	0	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	t0013	659	1	1	0	0	0	0	copy fasta	KRT32	chr17	41454513	41472386
KRT32_chr17_41454513_41472386	0/0	t0014	659	1	0	0	0	1	0	copy fasta	KRT32	chr17	41454513	41472386
KRT33A_chr17_41341092_41355828	0/1	t0001	89	438	84	82	211	16	44	copy fasta	KRT33A	chr17	41341092	41355828
KRT33A_chr17_41341092_41355828	0/0	t0002	28	10	10	0	0	0	0	copy fasta	KRT33A	chr17	41341092	41355828
KRT33A_chr17_41341092_41355828	0/0	t0003	89	1	0	0	1	0	0	copy fasta	KRT33A	chr17	41341092	41355828
KRT33B_chr17_41358498_41374813	0/1	t0001	402	407	84	78	180	18	46	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	t0002	402	13	1	0	12	0	0	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	t0003	402	4	4	0	0	0	0	copy fasta	KRT33B	chr17	41358498	41374813
KRT33B_chr17_41358498_41374813	0/0	t0004	402	1	1	0	0	0	0	copy fasta	KRT33B	chr17	41358498	41374813
KRT34_chr17_41372669_41387306	0/1	t0001	451	392	61	76	200	14	40	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	t0002	451	49	28	4	11	3	3	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	t0003	451	4	0	2	0	1	1	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	t0004	451	2	2	0	0	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	t0005	451	2	2	0	0	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	t0006	451	1	1	0	0	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT34_chr17_41372669_41387306	0/0	t0007	451	1	0	0	1	0	0	copy fasta	KRT34	chr17	41372669	41387306
KRT35_chr17_41471710_41486151	1/1	t0001	401	441	93	78	208	16	44	copy fasta	KRT35	chr17	41471710	41486151
KRT35_chr17_41471710_41486151	0/0	t0002	401	5	4	1	0	0	0	copy fasta	KRT35	chr17	41471710	41486151
KRT35_chr17_41471710_41486151	0/0	t0003	401	1	0	1	0	0	0	copy fasta	KRT35	chr17	41471710	41486151
KRT35_chr17_41471710_41486151	0/0	t0004	401	1	1	0	0	0	0	copy fasta	KRT35	chr17	41471710	41486151
KRT36_chr17_41481136_41494910	1/1	t0001	287	375	90	70	166	18	29	copy fasta	KRT36	chr17	41481136	41494910
KRT36_chr17_41481136_41494910	0/0	t0002	287	89	6	12	58	0	13	copy fasta	KRT36	chr17	41481136	41494910
KRT36_chr17_41481136_41494910	0/0	t0003	287	2	0	0	2	0	0	copy fasta	KRT36	chr17	41481136	41494910
KRT37_chr17_41415547_41429585	0/1	t0001	394	290	79	58	108	16	28	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	t0002	394	102	3	11	70	2	16	copy fasta	KRT37	chr17	41415547	41429585
KRT37_chr17_41415547_41429585	0/0	t0003	394	9	0	1	8	0	0	copy fasta	KRT37	chr17	41415547	41429585